Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45290 134 / 2e-33 RING/U-box superfamily protein (.1.2) AT4G09560 64 / 9e-11 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT5G52150 58 / 2e-09 RING/U-box superfamily protein (.1) AT1G22670 60 / 3e-09 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT5G52140 59 / 4e-09 RING/U-box superfamily protein (.1) AT4G26580 59 / 5e-09 RING/U-box superfamily protein (.1.2) AT1G71980 59 / 7e-09 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G17905 58 / 7e-09 ATL4H RING/U-box superfamily protein (.1) AT2G46495 57 / 1e-08 RING/U-box superfamily protein (.1) AT3G03550 57 / 1e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190500 [exp] 624 / 0 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.002G140500 [exp] 193 / 6e-55 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2) Potri.014G053500 [exp] 182 / 6e-51 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.001G127100 [exp] 147 / 9e-38 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 143 / 3e-36 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.010G235200 [exp] 63 / 6e-11 AT1G20823 80 / 3e-18 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 60 / 5e-10 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.008G025300 [exp] 60 / 6e-10 AT4G40070 86 / 7e-20 RING/U-box superfamily protein (.1) Potri.005G111100 [exp] 59 / 3e-09 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001683 [exp] 340 / 2e-110 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2) Lus10030117 [exp] 317 / 6e-101 AT5G45290 155 / 5e-41 RING/U-box superfamily protein (.1.2) Lus10035680 [exp] 139 / 4e-35 AT5G45290 343 / 1e-111 RING/U-box superfamily protein (.1.2) Lus10043426 [exp] 64 / 4e-11 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 63 / 5e-11 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10013618 [exp] 64 / 8e-11 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10015837 [exp] 59 / 4e-10 AT1G20823 61 / 3e-12 RING/U-box superfamily protein (.1) Lus10006788 [exp] 59 / 1e-09 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10016163 [exp] 59 / 1e-09 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10005816 [exp] 57 / 3e-09 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.018G114700.8 pacid=42800846 polypeptide=Potri.018G114700.8.p locus=Potri.018G114700 ID=Potri.018G114700.8.v4.1 annot-version=v4.1 ATGGGTTCGAATAGTAGTAGACCGGGGTCACGCACATCACGGACCCGACCGAATAGCAGGTCGTCCAGGTTCTTCTCTTCTCTCATCTGTGGTGGCTCCT CTTCTTCTCGTACAGCTCGTCACGAGATGGAAGACTATCCAGACAAGATTCTGATGAATTCTGCAGAACAGTGTTGTCCAGTCATCGAGGTACAGAATTC TGCAGAGGAATCATCTGTGGTTTCCAATACAGTAACAGGGTCTAGAAGCTCAGATACTGAAACTGGAGGATCATCTGGAAACAGAATAAGAGCCAGTGAG GGAACTTCTGAGAAATATGGTTATAGAAATCTTGACACAAACTCTCGAGGAAAATGCCTATCTGATAGTAAGGAGTTAGTTGGCCCAGATCAGGTAAGTG ATAGTCATGATGAATCAGGTAGAAATATAAGTATTGCTGAAGCTAGTACTTCATTTAAAGAACGACAGTCATCAGATCCTGTATCAATGAATGTTTCAAC TAACATGGATTCTGTCAATGGCATTGAAAATTCAGAGAACGAGGGTTTCTCTCAGATCTATCCTGATATAATACATACAAGCAGTTCAAACTCACCGAGG CATGGAGATTCATGTTCTAATGGTTTGGCTTTTGACAATCATATGGGTGAAGTAACAGACATGCCAAATTCTAATTCTGATTCAGTAAATCATAGATCTA TTGTCCCAGTAACCTTTCGCTCAACACAAGATGAGTCTATCCAAGATCCAGTACCTTCAGATTTAGGACTTCTTGTGCCCAATAGGGAACAAGGGAGGAC AGATGGAAGTGTACTCCATGTAGATGTTGTGAGTATCTCTTCCAGCATTTATTCAAGCAGCAATTCAGATACAAGCAGTCGTGAGGCCAGAAGGAATAGC AGAAGATTGTTTCGGGACGCATTTTCAAGGCGCAGTTCTAGGAGGCATGTTGATTCTCCTACTATTGTCTTCTCAACAGATAATACTGATGATCTTGAAT CCCATGACAGATGGCTCCTTGATTTCAGTGGTGATTTTTTTGACGATGGGATAGGCAGTGATTCTGGATACATGAGCAGGAGAATTCACAGATTGAATGA ACGAAGACGACACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGTGGCCTTGATGAGAATGGTCGACGAACAACCTCTTGTCCTTCTGGACTCCACCCT GACGGTACATGCTCGTGTGAATCATTCTTGATGGCTGAGGAGTCGAGTGCTCGTGGAAGTATATCACGAATAGTCATGCTTGCTGAAGCTCTATTTGAGG TTTTGGATGAAATCCATCGTCAGCCTGTGTCACTTTCTCTATCCATGATGTCGCTCCCTGCCCCTGAATCAGTTGTTGACTCTTTCCCTCTTAAGAATCA CAAAAAGTTGGACAGAGTCAAGGGCAATGATGAGGATGAACAGTGTTACATTTGCCTGGCCGAGTATGAGGAAGGTGACAAAATAAGAGTTCTTCCCTGC CACCACGAATATCACATGGTTTGTGTGGATAAATGGCTCAAAGAAATACATGGGTATTGTTATTGCCACCCACCTGCGTTTTTGCTGCTTATGTTTTCAT TCTTCTTAAACCGTATTCATAATCATTTTTTTTCCTTCTCTGGTGTGAAATTTTTGTCACATCCTTCTTCCCCCCTCCTCTCCCCTCTGATGGTATTTTA CAGGGTATGCCCGCTTTGTCGAGGAGATGTCCGCGAGGGTGGTGCCAGCGAGCCTTCAATACCAAATCCAGAAATTACTTCTACTTGA
AA sequence Show only first row Show all	>Potri.018G114700.8 pacid=42800846 polypeptide=Potri.018G114700.8.p locus=Potri.018G114700 ID=Potri.018G114700.8.v4.1 annot-version=v4.1 MGSNSSRPGSRTSRTRPNSRSSRFFSSLICGGSSSSRTARHEMEDYPDKILMNSAEQCCPVIEVQNSAEESSVVSNTVTGSRSSDTETGGSSGNRIRASE GTSEKYGYRNLDTNSRGKCLSDSKELVGPDQVSDSHDESGRNISIAEASTSFKERQSSDPVSMNVSTNMDSVNGIENSENEGFSQIYPDIIHTSSSNSPR HGDSCSNGLAFDNHMGEVTDMPNSNSDSVNHRSIVPVTFRSTQDESIQDPVPSDLGLLVPNREQGRTDGSVLHVDVVSISSSIYSSSNSDTSSREARRNS RRLFRDAFSRRSSRRHVDSPTIVFSTDNTDDLESHDRWLLDFSGDFFDDGIGSDSGYMSRRIHRLNERRRHSRSEIWERLRGGLDENGRRTTSCPSGLHP DGTCSCESFLMAEESSARGSISRIVMLAEALFEVLDEIHRQPVSLSLSMMSLPAPESVVDSFPLKNHKKLDRVKGNDEDEQCYICLAEYEEGDKIRVLPC HHEYHMVCVDKWLKEIHGYCYCHPPAFLLLMFSFFLNRIHNHFFSFSGVKFLSHPSSPLLSPLMVFYRVCPLCRGDVREGGASEPSIPNPEITST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45290			RING/U-box superfamily protein...		Potri.018G114700 [exp]	0	1
AT2G38820			Protein of unknown function (D...		Potri.005G058200 [exp]	1.41	0.8155
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.004G062500 [exp]	3.74	0.8201
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.005G251500 [exp]	17.74	0.7671
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Potri.001G167100 [exp]	17.83	0.7891	ALDH7.1
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.010G100200 [exp]	19.13	0.7130	NTR1.3
AT2G41640			Glycosyltransferase family 61 ...		Potri.006G048500 [exp]	20.49	0.7470
AT2G20010			Protein of unknown function (D...		Potri.018G085900 [exp]	24.53	0.6952
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.019G072800 [exp]	26.17	0.6728
AT1G80570			RNI-like superfamily protein (...		Potri.017G053400 [exp]	26.83	0.7631
AT5G61920			unknown protein		Potri.006G178100 [exp]	42.05	0.7347

Compare expression of checked genes

Potri.018G114700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.