Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06220 1710 / 0 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 1645 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 591 / 0 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 570 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT3G22980 328 / 1e-96 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT2G45030 103 / 3e-22 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 102 / 6e-22 Translation elongation factor EFG/EF2 protein (.1) AT1G62750 84 / 3e-16 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) AT5G39900 74 / 3e-13 Small GTP-binding protein (.1) AT5G08650 72 / 2e-12 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190600 [exp] 1889 / 0 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.007G065700 [exp] 587 / 0 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 587 / 0 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 579 / 0 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 241 / 4e-66 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.003G113500 [exp] 100 / 3e-21 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 94 / 2e-19 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G109900 [exp] 94 / 2e-19 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.006G053000 [exp] 72 / 9e-13 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034111 [exp] 1781 / 0 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031129 [exp] 1778 / 0 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043477 [exp] 810 / 0 AT1G06220 828 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043478 [exp] 749 / 0 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031201 [exp] 484 / 6e-157 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031763 [exp] 476 / 2e-154 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031186 [exp] 382 / 7e-123 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10004749 [exp] 351 / 2e-105 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 334 / 9e-101 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031185 [exp] 138 / 5e-36 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0437 [poplar] [flax] EF-G_C PF00679 [poplar] [flax] EFG_C Elongation factor G C-terminus CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0329 [poplar] [flax] S5 PF03764 [poplar] [flax] EFG_IV Elongation factor G, domain IV CL0329 [poplar] [flax] PF16004 [poplar] [flax] EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
Representative CDS sequence Show only first row Show all	>Potri.018G114900.1 pacid=42801128 polypeptide=Potri.018G114900.1.p locus=Potri.018G114900 ID=Potri.018G114900.1.v4.1 annot-version=v4.1 ATGGATGACAATTTGTATGATGAGTTTGGGAACTACATTGGTCCGGAAATAGAGTCGGACCGAGAGAGCGATGGTGAGGAAGAAGATGAAGAACTTCCAG ACAAGCCTCATGAAGACGAGGAGGAATCTGACGGTGAAGAGGCAGTTCATGCTTCCAATGGTTGGCTTACTGCCCCTAATGATGTTGACATGGATAACCA AGTTGTCCTTGCTGAGGACAAGAAGTACTACCCAACCGCGGAGGAGGTTTATGGTCCAGGTGTTGAAACGTTGGTTAATGATGAAGATGAGCAGCCTCTT GAGCAACCGATAATTAAGCCTGTTAGGAACATCAAGTTTGAGGTTGGGGTTAAGGATTCCTCAACTTATGTTTCCAGCCAGTTTCTTGTTGGTCTTATGT CAAATCCCTCTTTAGTACGCAACGTTGCCCTCGTGGGCCATCTACAGCATGGGAAGACAGTTTTTATGGACATGTTGGTTGAGCAAACACATCATACGCC AACTTTTGATATAAATAGCGAGAAACATATTAGGTACACAGATACAAGGATTGATGAGCAAGAAAGAAGGATATCTATCAAGGCAGTTCCAATGTCACTT GTCCTTGAGGATAGCAATTCAAAGTCGTACCTCTGTAACATCATGGACACCCCTGGTCATGTGAACTTCTCTGATGAAATGACTGCTGCCCTCAGGCTTG CTGATGGTGCAGTGTTGGTTGTGGATGCTGCTGAAGGAGTGATGGTAAACACAGAGAGGGCCATACGCCACGCAATTCAGGAACAGCTGCCTATTGTTGT TGTGATCAATAAGGTTGACAGGCTCATAACAGAGCTCAAATTGCCCCCAAAGGATGCGTATCACAAGCTAAGGCATACCATAGAAGTCATTAACAACCAT ATATCTGCTGTCTCTTCAACTGCTGGAAATGTTCAAGTGATAGATCCAGCTGCTGGAAATGTTTGTTTTGCTGGTGCAACCGCAGGATGGTCCTTCACTT TGCATTCCTTTGCTAGATTGTATCTCAAACTCCATGGTATCCCATTTGATGCTGAAAAGTTTGCATCTCGTCTCTGGGGGGATATGTATTATAATCCCGA GGACAGGACTTTCAAGAAGAAACCTCCTGCTAGTGGAGCAGAAAGATCGTTTGTCCAATTTGTGCTGGAACCTCTCTACAAAATATACAGCCAAGTGATT GGAGAACATAAAAAAAGCGTTGAGGCTACTCTTGCTGAGTTTGGTGTTACTCTTCCTAATTCAGCTTATAAATTAAATGTCAGGCCTTTGCTAAGACTGG CTTGCAGTCAAGTTTTTGGCTCAGCCTCAGGTTTCACTGACATGCTTGTTAAGCATATACCTTCGGCTAAGGTTGCTGCTGCCAGGAAGGTTGATCATAC ATATACTGGGCCCAAAGATTCAATGATTTACCAGGCCATGCTAGACTGTGATCCTGCTGGCCCCTTAATGGTTAATGTGACGAAATTGTATCCGAAGTCA GATTGCAGTTCATTTGATGCTTTTGGTAGGGTTTATAGTGGTAAAATTATGACAGGGCAGTCTGTAAAAGTTTTGGGAGAAGGCTATTCACCAGAGGATG AGGAGGACATGACAGTAAAAGAAGTGACAAAACTATGGGTATATCAAGCTCGGTATAGGTTACCCATAAGTATGGCACCTCCTGGTTCCTGGGTTCTCAT TGAAGGTGTGGATGCTTCAATTATGAAAACTGCAACTCTCTGTAATGTGAATTATAATGAAGAAGATGTATACATATTTCGACCTCTTCAGTTCAATACT CTTCCAGTAGTGAAAACTGCTACTGAGCCTCTAAATCCAAGCGAGTTGCCCAAAATGGTGGAGGGTCTTAGGAAGATCAGTAAAAGCTATCCTCTGGCCA TAACTAAAGTTGAGGAGTCTGGGGAGCACACTATACTTGGTACCGGAGAGTTGTACTTAGATTCTATTATGAAGGACCTTAGGGAGCTATATTCTGAAGT GGAAGTCAAGGTAGCCGATCCTGTTGTCTCATTCTGTGAAACTGTGGTGGAGTCCTCGTCAATGAAATGCTTTGCTGAAACACCCAACAAGAAGAATAAA ATAACCATGATCGCTGAGCCATTGGAGAAAGGGCTTGCAGAAGACATTGAAAATGGTGTTGTAAGCATTGACTGGAATCGGAAAGCTCTAGGTGACTTCT TCAAGACAAAATATGATTGGGATTTGCTTGCAGCACGATCCATATGGGCTTTTGGCCCTGATAAGCAGGGACCTAACATTTTGCTAGATGACACACTTCC AACTGAAGTGGACAAGGGATTACTAGGTGCCGTGAAGGATTCTATTGTTCAAGGGTTTCAGTGGGGTGCACGAGAAGGACCACTTTGTGATGAACCAATC AGAAATGTTAAGTTCAAGATAGTTGATGCTAGGATTGCGCCTGAACCACTTCATCGTGGATCTGGTCAAATAATTCCAACAGCTCGGCGTGTGGCCTACT CAGCTTTTCTTATGGCAACCCCAAGGCTCATGGAACCCGTATATTATGTGGAGATACAAACACCAATTGACTGTCTCACTGCAATCTATACGGTGTTATC TCGCAGACGTGGGCATGTTACAGCAGATGTTCCTCAGCCTGGGACTCCAGCTTATATTGTTAAGGCATTTTTACCTGTCATAGAATCATTTGGTTTTGAG ACGGACTTGAGGTACCATACCCAAGGTCAAGCATTTAGCCTCTCGGTGTTTGATCATTGGGCTATAGTCCCTGGAGATCCCCTTGATAAGAGCATTGTTC TGAGGCCACTTGAGCCTGCACCAATCCAGCACCTTGCCCGTGAATTTATGGTGAAGACAAGGCGTCGCAAGGGAATGAGTGAAGATGTGAGCATTAACAA GTTCTTCGATGAGGCTATGGTGGTTGAGCTGGCTCAGCAAGCAGCTGATATTCATCAACAAATGATGTGA
AA sequence Show only first row Show all	>Potri.018G114900.1 pacid=42801128 polypeptide=Potri.018G114900.1.p locus=Potri.018G114900 ID=Potri.018G114900.1.v4.1 annot-version=v4.1 MDDNLYDEFGNYIGPEIESDRESDGEEEDEELPDKPHEDEEESDGEEAVHASNGWLTAPNDVDMDNQVVLAEDKKYYPTAEEVYGPGVETLVNDEDEQPL EQPIIKPVRNIKFEVGVKDSSTYVSSQFLVGLMSNPSLVRNVALVGHLQHGKTVFMDMLVEQTHHTPTFDINSEKHIRYTDTRIDEQERRISIKAVPMSL VLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLVVDAAEGVMVNTERAIRHAIQEQLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH ISAVSSTAGNVQVIDPAAGNVCFAGATAGWSFTLHSFARLYLKLHGIPFDAEKFASRLWGDMYYNPEDRTFKKKPPASGAERSFVQFVLEPLYKIYSQVI GEHKKSVEATLAEFGVTLPNSAYKLNVRPLLRLACSQVFGSASGFTDMLVKHIPSAKVAAARKVDHTYTGPKDSMIYQAMLDCDPAGPLMVNVTKLYPKS DCSSFDAFGRVYSGKIMTGQSVKVLGEGYSPEDEEDMTVKEVTKLWVYQARYRLPISMAPPGSWVLIEGVDASIMKTATLCNVNYNEEDVYIFRPLQFNT LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNK ITMIAEPLEKGLAEDIENGVVSIDWNRKALGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLGAVKDSIVQGFQWGAREGPLCDEPI RNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCLTAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFE TDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMVVELAQQAADIHQQMM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Potri.018G114900 [exp]	0	1
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.002G252900 [exp]	5.19	0.8226	Pt-CPN60.2
AT3G56900			Transducin/WD40 repeat-like su...		Potri.016G030400 [exp]	6.70	0.7985
AT5G36950		DEGP10	DegP protease 10 (.1)		Potri.008G079900 [exp]	8.12	0.7948
AT5G67630			P-loop containing nucleoside t...		Potri.016G096800 [exp]	9.05	0.8028
AT5G22100			RNA cyclase family protein (.1...		Potri.009G016000 [exp]	11.31	0.7986
AT4G15010			Mitochondrial substrate carrie...		Potri.001G222400 [exp]	14.14	0.7848
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G000500 [exp]	15.16	0.7763
AT1G64880			Ribosomal protein S5 family pr...		Potri.013G076200 [exp]	15.90	0.7734
AT3G49990			unknown protein		Potri.005G234800 [exp]	16.43	0.7838
AT5G16930			AAA-type ATPase family protein...		Potri.011G143300 [exp]	20.49	0.7934

Compare expression of checked genes

Potri.018G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.