Plant FIBer expression Database

Potri.018G115000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G13100 699 / 0 AtG3Pp5 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3)
AT3G47420 524 / 0 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
AT1G30560 501 / 1e-174 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1)
AT4G25220 486 / 1e-168 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1)
AT4G17550 480 / 1e-165 AtG3Pp4 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G124200
[exp]
497 / 1e-172 AT3G47420 711 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Potri.003G109300
[exp]
490 / 6e-170 AT3G47420 694 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Potri.001G152300
[exp]
490 / 1e-169 AT4G17550 692 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Potri.003G082366
[exp]
439 / 3e-150 AT4G17550 624 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040002
[exp]
725 / 0 AT2G13100 708 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3)
Lus10040154
[exp]
506 / 4e-176 AT4G17550 734 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Lus10031153
[exp]
501 / 9e-175 AT3G47420 695 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Lus10027210
[exp]
501 / 2e-174 AT3G47420 705 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Lus10004358
[exp]
500 / 2e-173 AT4G17550 725 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Lus10038923
[exp]
435 / 5e-150 AT3G47420 586 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Lus10027211
[exp]
324 / 1e-107 AT3G47420 454 / 9e-159 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Lus10031729
[exp]
119 / 5e-32 AT3G47420 155 / 2e-46 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF07690 MFS_1 Major Facilitator Superfamily
Representative CDS sequence
>Potri.018G115000.1 pacid=42801061 polypeptide=Potri.018G115000.1.p locus=Potri.018G115000 ID=Potri.018G115000.1.v4.1 annot-version=v4.1
ATGCAATCGAAAACCCAAATTCTTGCTCCAGCTTTTACCCTTTTCCCATCTCTTAAACCTCCAAACAAGACCCTAACTTTTCACCAATTTACAGTCTTAG
CCATCACCTTTCTCGCTTATGCTTCATTTCATGCCTCAAGAAAGCCACCAAGTATTGTAAAAGGTGTACTTGGACCCAAAATTCAATTGAACTCTTCAAC
GATTGAGTCTAATTTAACTTCATTAGAATCCAATGGTACTGGTTGGGCTCCCTTTAATGGCCCTAAAGGGACTCACCGGCTTGGTGAGCTTGATCTTGCA
TTTTTGTCTGCATATTCAATAGGAATGTATTTTGCAGGACATGTTGGTGATAGGATTGATTTAAGGTTGTTTCTTGTTTTTGGAATGGTGGGTAGTGGTC
TTTTGACCATTATTTTTGGGTTAGGTTATTGGTTTAATGTACATTTGTTAGGATATTTTGTGAGTGTGCAGATTTTGTGTGGTTTGTTTCAGTCTATAGG
GTGGCCTTGTGTGGTGGCAGTGGTTGGGAATTGGTTTGGGAAAGCTAAGAGAGGGTTGATAATGGGGATATGGACTTCCCATACATCGGTAGGGAACATT
ATTGGGTCGGTTGTGGCATCTGGGGTTTTGGAGTTTGGTTGGGGTTGGTCATTTGTGGTGCCCGGAGTTTTGGTGATTTTAGCTGGGGTTTTGGTGTTCC
TGTTTCTTGTTGTTAATCCTGAAGATATTGGATTTGAGACTCCAGGGAAGGAGATTGAAATGGATGTGGAGGTGAATGGTTTGGAGAATTTGGAGAAGGT
GGAATCAGAAGAAGCAGGGCTTCTTGGGGAGGAAAACTTGGATTCTACCGCAGCCATCGGATTCCTGGAGGCTTGGAGATTACCTGGTGTGGCACCATTT
GCTTTCTGCCTCTTCTTTTCAAAGCTAGTGGCGTACACTTTTCTATACTGGTTGCCCTTCTACATAAGTCACACAGATGTTGCTGGCGTGCATTTGTCCC
ACAAGACTGCTGGAATTCTTTCAACGGTATTCGATATTGGAGGAGTCTTTGGCGGAGTTTTGGCAGGATTTATATCTGATATGATTGAAGCTCGGGCAGT
GACTTCAATAGTATTCTTGCTTCTATCAATTCCAGCCCTTGTTCTGTACCGGGTTTATGGAAGCGTGTCTATGCTCCTCAATAATGCTTTGATGTTTCTT
TCTGGGCTGCTTGTAAATGGCCCGTATGCTCTAATTACAACAGCTGTTGCAGCTGATCTTGGTACCCAGGACTTGATTAAAGGAAATTCCCGAGCCTTAG
CTACTGTGTCTGCAATTATAGATGGCACAGGTTCTGTTGGGGCAGCTGTTGGCCCCCTTCTGGCAGGGTATATCTCCACAAGAGGATGGAACAGTGTCTT
TCTTATGCTTATTGTTTCTATATTCCTTGCCAGTTTGTTCTTGATTCGAGTTGCGAAAAGTGAGATTAAAGGGATGCTGAACGATGGAAAATGGCTTTCA
AACAATGCAACTGCTCAATGA
AA sequence
>Potri.018G115000.1 pacid=42801061 polypeptide=Potri.018G115000.1.p locus=Potri.018G115000 ID=Potri.018G115000.1.v4.1 annot-version=v4.1
MQSKTQILAPAFTLFPSLKPPNKTLTFHQFTVLAITFLAYASFHASRKPPSIVKGVLGPKIQLNSSTIESNLTSLESNGTGWAPFNGPKGTHRLGELDLA
FLSAYSIGMYFAGHVGDRIDLRLFLVFGMVGSGLLTIIFGLGYWFNVHLLGYFVSVQILCGLFQSIGWPCVVAVVGNWFGKAKRGLIMGIWTSHTSVGNI
IGSVVASGVLEFGWGWSFVVPGVLVILAGVLVFLFLVVNPEDIGFETPGKEIEMDVEVNGLENLEKVESEEAGLLGEENLDSTAAIGFLEAWRLPGVAPF
AFCLFFSKLVAYTFLYWLPFYISHTDVAGVHLSHKTAGILSTVFDIGGVFGGVLAGFISDMIEARAVTSIVFLLLSIPALVLYRVYGSVSMLLNNALMFL
SGLLVNGPYALITTAVAADLGTQDLIKGNSRALATVSAIIDGTGSVGAAVGPLLAGYISTRGWNSVFLMLIVSIFLASLFLIRVAKSEIKGMLNDGKWLS
NNATAQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G13100 AtG3Pp5 glycerol-3-phosphate permease ... Potri.018G115000
[exp]
0 1
AT3G54360 zinc ion binding (.1) Potri.001G036400
[exp]
11.22 0.6822
Potri.004G034301
[exp]
19.33 0.6364
AT2G04410 RPM1-interacting protein 4 (RI... Potri.015G089201
[exp]
19.79 0.6505
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Potri.006G240900
[exp]
29.29 0.6140
AT2G34690 ACD11 ACCELERATED CELL DEATH 11, Gly... Potri.016G055300
[exp]
54.96 0.6037
AT4G36720 HVA22K HVA22-like protein K (.1) Potri.007G029300
[exp]
61.48 0.5536
AT5G50230 Transducin/WD40 repeat-like su... Potri.015G087200
[exp]
63.38 0.6389
AT1G66810 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G176900
[exp]
64.48 0.6328
AT4G16144 AMSH3 associated molecule with the S... Potri.010G141100
[exp]
69.71 0.5906
AT5G20910 AIP2 ABI3-interacting protein 2, RI... Potri.006G217600
[exp]
74.16 0.6293

Potri.018G115000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.