Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPS11.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23740 272 / 4e-95 RPS11-BETA ribosomal protein S11-beta (.1) AT3G48930 269 / 6e-94 EMB1080 embryo defective 1080, Nucleic acid-binding, OB-fold-like protein (.1) AT4G30800 267 / 4e-93 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G053300 [exp] 277 / 3e-97 AT5G23740 271 / 1e-94 ribosomal protein S11-beta (.1) Potri.002G140400 [exp] 276 / 6e-97 AT5G23740 266 / 8e-93 ribosomal protein S11-beta (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030113 [exp] 283 / 3e-99 AT5G23740 282 / 4e-99 ribosomal protein S11-beta (.1) Lus10001681 [exp] 280 / 2e-98 AT5G23740 281 / 7e-99 ribosomal protein S11-beta (.1) Lus10005348 [exp] 280 / 4e-98 AT5G23740 282 / 2e-99 ribosomal protein S11-beta (.1) Lus10041029 [exp] 278 / 1e-97 AT5G23740 281 / 6e-99 ribosomal protein S11-beta (.1) Lus10008806 [exp] 285 / 2e-91 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00366 [poplar] [flax] Ribosomal_S17 Ribosomal protein S17 CL0021 [poplar] [flax] PF16205 [poplar] [flax] Ribosomal_S17_N Ribosomal_S17 N-terminal
Representative CDS sequence Show only first row Show all	>Potri.018G115400.2 pacid=42801235 polypeptide=Potri.018G115400.2.p locus=Potri.018G115400 ID=Potri.018G115400.2.v4.1 annot-version=v4.1 ATGGCTGAGCAGACTGAAAAGGCATTTTTGAAACAACCCAAAGTGTTTCTCAGTTCAAAGAAATCTGGGAAAGGAAAGAGGCCTGGAAAAGGTGGAAACA GATTCTGGAAGAGTATTGGATTGAGTTTCAAGACTCCCAGAGAAGCCACTGAAGGAACTTATATTGATAAAAAATGCCCCTTCACCGGCACTGTTTCTAT TCGAGGTCGTATCTTAGCTGGAACTTGTCATAGTGCCAAGATGGTGAGGACAATTATTGTTCGGCGGAACTATCTTCACTGGGTCAAGAAATACCAAAGA TATGAGAAGAGGCATTCAAATATTCCAGCACACGTATCCCCATGCTTCCGTGTGAGGGAAGGCGATCATGTCATCATCGGACAATGCAGGCCACTGTCCA AGACTGTTAGATTTAATGTATTGAAAGTGATTCCAGCTGGTTCTGCTGCTGGTGGGAAGAAGGCCTTCACAGGAATGTGA
AA sequence Show only first row Show all	>Potri.018G115400.2 pacid=42801235 polypeptide=Potri.018G115400.2.p locus=Potri.018G115400 ID=Potri.018G115400.2.v4.1 annot-version=v4.1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLSFKTPREATEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHWVKKYQR YEKRHSNIPAHVSPCFRVREGDHVIIGQCRPLSKTVRFNVLKVIPAGSAAGGKKAFTGM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.018G115400 [exp]	0	1	Pt-RPS11.3
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G072700 [exp]	2.00	0.9668
AT3G12390			Nascent polypeptide-associated...		Potri.001G034400 [exp]	4.00	0.9613
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.019G099000 [exp]	5.47	0.9589
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.002G057600 [exp]	7.74	0.9583	RPL18.7
AT5G27990			Pre-rRNA-processing protein TS...		Potri.005G047901 [exp]	8.00	0.9447
AT5G28060			Ribosomal protein S24e family ...		Potri.008G152500 [exp]	9.79	0.9566
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G101000 [exp]	10.24	0.9545	Pt-RPL7.7
AT4G18100			Ribosomal protein L32e (.1)		Potri.001G353900 [exp]	13.26	0.9533	Pt-RPL32.2
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.016G077000 [exp]	13.67	0.9446	UBQ1.1
AT2G46290			Transducin/WD40 repeat-like su...		Potri.008G141400 [exp]	14.42	0.9470	Pt-TRIP.2

Compare expression of checked genes

Potri.018G115400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.