Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25270 352 / 1e-111 Ubiquitin-like superfamily protein (.1) AT5G42220 203 / 5e-55 Ubiquitin-like superfamily protein (.1) AT5G11080 84 / 3e-17 Ubiquitin-like superfamily protein (.1.2) AT2G17200 59 / 1e-08 DSK2 ubiquitin family protein (.1) AT2G17190 58 / 2e-08 ubiquitin family protein (.1) AT2G36170 54 / 2e-08 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G52590 54 / 2e-08 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT3G62250 53 / 6e-08 UBQ5 ubiquitin 5 (.1) AT1G23410 53 / 6e-08 Ribosomal protein S27a / Ubiquitin family protein (.1) AT2G47110 53 / 7e-08 UBQ6 ubiquitin 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G059700 [exp] 1128 / 0 AT5G25270 343 / 3e-108 Ubiquitin-like superfamily protein (.1) Potri.002G013500 [exp] 233 / 3e-65 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.005G247900 [exp] 231 / 1e-64 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1) Potri.005G100200 [exp] 65 / 9e-11 AT2G17200 478 / 2e-164 ubiquitin family protein (.1) Potri.004G194000 [exp] 57 / 2e-09 AT3G52590 210 / 3e-71 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 54 / 2e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 54 / 2e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 54 / 2e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.004G205100 [exp] 57 / 5e-08 AT2G17200 425 / 3e-143 ubiquitin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040001 [exp] 657 / 0 AT5G25270 328 / 3e-102 Ubiquitin-like superfamily protein (.1) Lus10008806 [exp] 462 / 1e-150 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1) Lus10034563 [exp] 211 / 6e-61 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10021830 [exp] 186 / 7e-49 AT5G42220 595 / 0.0 Ubiquitin-like superfamily protein (.1) Lus10014433 [exp] 62 / 1e-09 AT2G17200 567 / 0.0 ubiquitin family protein (.1) Lus10023934 [exp] 61 / 3e-09 AT2G17200 565 / 0.0 ubiquitin family protein (.1) Lus10008873 [exp] 54 / 2e-08 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 53 / 6e-08 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 53 / 6e-08 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10018367 [exp] 52 / 4e-07 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Potri.018G115500.3 pacid=42800842 polypeptide=Potri.018G115500.3.p locus=Potri.018G115500 ID=Potri.018G115500.3.v4.1 annot-version=v4.1 ATGGGAAGTAATATTGCTGATAAAATTCATGGAGCTGGTGAGGCAGAGGGTTCTGAAACAAACATTGAAATAAAAATAAAAACATTGGATTCTCAAACCT ATACTTTGAGAGTGGATAAACAGATGCCAGTTCCTGCTTTAAAAGAACAGATTGCTTCTGTCACTGGCGTGCTATCAGAACAACAACGTCTAATATGTCG TGGAAAAGTCTTAAAAGATGACCAACTACTCTCTGCCTATCATGTCGAAGATGGTCACACCTTGCACCTGGTAGTTAGGCAACCTATACCATCTGAGGGC TTATCCAATCATTCAGCCAGTGATCCTGCTTCAGGTTCAAGCCATCACACTGGTCAGGTGGCTCCCAGTGTTGTAATAGAAACTTTTAGTGTGCCTGATC AAGGGGATGCAGTTCCTCCAGAAATCAGTAGGATTGTCTCTGCTGTTCTTGGATCTTTTGGATTTTCAAATATCGGAGGTGTCAGTGAAGGGGTCGATGT GGAGCGTGGTTTGCGAAGAACATCAGCTGCTGGTGGCACAATGGATGCAAGCCAACTGCAATCTGAACAAACTGGCACCAGGGGTCAGTCTGACAGATCA CAGAATGTTTTTGGGCTTCCGACAGCAGTTTCCTTGGGATCTCTGAATCCTCCTGTAATTCCTGATTCTCTGACAACTCTGTCCCAATATCTGAGCAATT TGAGGCGAGAATTTGATGCCATCGGCAGAGGCGGGGAAAACATTGCTCAAGCAGATGCTGCACTCAGGATGGAGCAAATAGATTCTAATACCACATCACT ATCAGGAACTGGACAAGAAAGACTTCCATCACCTGCATCCTTGGCAGAAGTGATGCTGTCTAGTAGACAATTACTCACCGAACAAGTTGGAGAATGTTTA CTTCAACTTGCAAGACAACTAGAGAATCAAGCACATATTACTGATACTGCAGCGCGACACGCAACTCAGTCTAGTGCATTGAGAACTGGAGTCCAACTTC ATAATTTAGGTGCCCTTCTTCTCGAACTTGGACGTACAAGCATGACATTACGACTAGGTCAAGCACCGTCTGAAGCTGTGGTTAATGCGGGCCCTGCTGT TTTTATCAATCAATCTGGTCCTAATCCTCTCATGGTTCAGCCTCTTCCTTTTCAACCAGGGACAAGCTTTGGTGCTGTCCCTTTAGGATCCATGCAGCCT GGATCTGGTCTGACTAATGGTGTCGGTACCGGGTTTCTTCCAAGGCGAATTGATATACAAATACGAAGAGGTTCATCGACAGCTACCCCCAACAATAATC GTGAGGAACATGGTCAGACACAGCAAACTGCTGGGCAGAGAAACCCACCAACCAGTTCTGGTGGTGAAAATCCTAGTAGTCAAACAAGTTCAAGGCTCTC AGAGGGTTCATCTTTTGCTGGAGAGCCTGTACGAGTGGTGCCTCTTAGAACGGTGGTTGCAGCTGTTCCTGGCACATTTGGCCGCCTTCCTTCTGATTCA TCTGGTAATTCTATAGGTCTATACTATCCTCTTCTTGGACGATTTCAAAATGTAGCTTCTGGGCATGGGAATAGTGGGCGGGGATCTCAAGCATCTGGTG AATATCACACTGCTGAGGTCCAAACTGAGCAGCTGCCAACTCCTGAACCTGCTTTGCAGCAGCAAAACTTTGAACAACGCACAAGAGATGGATCATTGCC ACCAAACTTGAGACAAGAGCCTTCTATTTCTCGCAGTATAAGTATCAACATTCTGTCAGCTAGTGGGGCCCAAAACAACCAGGATTCTGAACGACATATC CCCGACAATATTTTGCAGCTTCTGAGGACCATCTTACCTGGTGATATCCATATGGAGGATGCCAGCTTACGAGGAACAACTACTAGTTCTGTCCCTGAGA CTGCAGGGCAATCTACTGCTACTGCAGAAGCAGAACCAAGAGCTACTGATGAGGGGATATTTCTGTCTAATTTGCTTCGTGAGATCATGCCCCTCATATC TCAAAGTGGAGGTGCAGAACCCAGTGCCATACCTCCTGGAGAAGCACAGAACTCTGGGAATCAGAGGCCTCGAGATTCTTCAACCCATGCTGAAAACTCT GGCATTGGAACATCTCGTGGCCATGATACGGAACCAAGCCCTCCAAATTCAAAACGCCAAAAGGTCTGGCATGTTTAA
AA sequence Show only first row Show all	>Potri.018G115500.3 pacid=42800842 polypeptide=Potri.018G115500.3.p locus=Potri.018G115500 ID=Potri.018G115500.3.v4.1 annot-version=v4.1 MGSNIADKIHGAGEAEGSETNIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQPIPSEG LSNHSASDPASGSSHHTGQVAPSVVIETFSVPDQGDAVPPEISRIVSAVLGSFGFSNIGGVSEGVDVERGLRRTSAAGGTMDASQLQSEQTGTRGQSDRS QNVFGLPTAVSLGSLNPPVIPDSLTTLSQYLSNLRREFDAIGRGGENIAQADAALRMEQIDSNTTSLSGTGQERLPSPASLAEVMLSSRQLLTEQVGECL LQLARQLENQAHITDTAARHATQSSALRTGVQLHNLGALLLELGRTSMTLRLGQAPSEAVVNAGPAVFINQSGPNPLMVQPLPFQPGTSFGAVPLGSMQP GSGLTNGVGTGFLPRRIDIQIRRGSSTATPNNNREEHGQTQQTAGQRNPPTSSGGENPSSQTSSRLSEGSSFAGEPVRVVPLRTVVAAVPGTFGRLPSDS SGNSIGLYYPLLGRFQNVASGHGNSGRGSQASGEYHTAEVQTEQLPTPEPALQQQNFEQRTRDGSLPPNLRQEPSISRSISINILSASGAQNNQDSERHI PDNILQLLRTILPGDIHMEDASLRGTTTSSVPETAGQSTATAEAEPRATDEGIFLSNLLREIMPLISQSGGAEPSAIPPGEAQNSGNQRPRDSSTHAENS GIGTSRGHDTEPSPPNSKRQKVWHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25270			Ubiquitin-like superfamily pro...		Potri.018G115500 [exp]	0	1
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	1.00	0.8828
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	2.44	0.8104
AT5G03450			Transducin/WD40 repeat-like su...		Potri.010G228000 [exp]	8.48	0.7591
AT4G26310			elongation factor P (EF-P) fam...		Potri.001G004300 [exp]	8.48	0.7829
AT1G77310			unknown protein		Potri.005G067800 [exp]	12.84	0.7730
AT1G21610			wound-responsive family protei...		Potri.007G101201 [exp]	13.26	0.7528
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.002G137100 [exp]	13.71	0.8067
AT5G36930			Disease resistance protein (TI...		Potri.001G028750 [exp]	14.28	0.7192
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.016G046802 [exp]	15.00	0.7810
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.014G036800 [exp]	16.43	0.7868

Compare expression of checked genes

Potri.018G115500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.