Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07390 244 / 8e-72 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74190 226 / 6e-65 AtRLP15 receptor like protein 15 (.1) AT1G74170 216 / 2e-61 AtRLP13 receptor like protein 13 (.1) AT2G25470 213 / 2e-60 AtRLP21 receptor like protein 21 (.1) AT3G53240 206 / 3e-58 AtRLP45 receptor like protein 45 (.1) AT1G58190 202 / 1e-56 AtRLP9 receptor like protein 9 (.1.2) AT5G49290 194 / 8e-54 ATRLP56 receptor like protein 56 (.1) AT1G54470 192 / 3e-53 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT1G74180 188 / 9e-52 AtRLP14 receptor like protein 14 (.1) AT1G47890 164 / 2e-43 AtRLP7 receptor like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G117981 [exp] 791 / 0 AT1G07390 307 / 4e-94 receptor like protein 1 (.1.2.3) Potri.018G117927 [exp] 743 / 0 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.018G118035 [exp] 727 / 0 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G120700 [exp] 723 / 0 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.018G118062 [exp] 716 / 0 AT1G74190 421 / 1e-129 receptor like protein 15 (.1) Potri.001G063700 [exp] 390 / 9e-127 AT2G25470 357 / 9e-109 receptor like protein 21 (.1) Potri.001G064600 [exp] 387 / 1e-125 AT1G74180 347 / 5e-105 receptor like protein 14 (.1) Potri.018G144600 [exp] 378 / 1e-124 AT1G07390 301 / 1e-90 receptor like protein 1 (.1.2.3) Potri.003G041400 [exp] 383 / 1e-123 AT1G74190 334 / 1e-99 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 370 / 2e-119 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10027856 [exp] 262 / 3e-78 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10042381 [exp] 261 / 1e-77 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10002742 [exp] 168 / 7e-45 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10016325 [exp] 160 / 2e-44 AT2G34930 206 / 4e-59 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 164 / 4e-43 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 160 / 4e-42 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 159 / 7e-42 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10011039 [exp] 159 / 2e-41 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10039512 [exp] 158 / 2e-41 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G117900.2 pacid=42802237 polypeptide=Potri.018G117900.2.p locus=Potri.018G117900 ID=Potri.018G117900.2.v4.1 annot-version=v4.1 ATGAGCCTCTTGGAAGTCTTAGATTTGTCCAACAATGGCTTATCAGGCAACATACCCGAGCAGTTGGTGGAAAATTGTTTATCATTAGGTGTTCTCATGC TTTCAAATAATTATTTGAAAGGCCAGCTTTTCTGGAAAAATTTCAACTTAACATACTTGACCGAGCTGATATTAAGAGGGAATCAGTTAACCGGGATTCT TCCGAATAGCTTATCTAATTGTTCTGCATTGCAAGCATTGGATGTCAGTCTCAATAATTTATCTGGTAAGATACCGAGATGGATAGGGTATATGTCTTCT CTTCAATATTTAGACCTTTCAGAGAACAATCTTTTTGGAAGTCTACCATCCAACTTTTGTTCTTCAAGGATGATGATAGAAGTTTATTTATCAAAAAATA AACTAGAAGGATCACTGATTGGTGCGCTCGATGGTTGTCTGTCGCTGAAGAGATTAGATCTTAGCCATAATTATTTTAAAGGTGGCATTCCCGAGTCAAT TGGTTCTTCGTTAGAGTTAAGCGTTCTTCTTTTAGGTTATAATAATCTAGAAGCTGAAATCCCAAGACAGCTGTGCGAACTAAAGAAATTACGCTTGATT GATCTTTCTCATAATAATCTGTGTGGTCATATTCTTCCATGCCTACAACCTAGAAGCGAGTGGTATAGGGAATGGGACAGTGCTCCAGGTCCTTCTACTA TGCTGCTAGCATCTGCTCCTATGCCCTTGGAAGATCCTTCTGTTAATAAATCTGTTGAGATTACAATAAAGAGTATATCGTATTCATTCAAGGGAATCAT CCTCAATTTGATCTCTGGTATCGATCTCTCCTGCAATAATTTGACAGGAGAGATTCCTTTTGAGCTTGGAAACCTCAACAACATTGAGTTGTTGAATCTA TCCCATAACAGTTTAACAGGTCCCATACCACCTACATTTTCAAACCTGAAGAAAATTGAAACTCTGGATCTTTCCTACAACAACTTGAACGGGGAAATTC CTCCCCAGCTTCTCAACTTAAACTCCCTATCTGCTTTCAGTGTAGCCCATAATAACTTATCTGGCAAAACGCCAGAGATGGTTGCACAATTCTCAACATT CAACAAGTCTTGCTATGAGGGAAATCCGTTGCTTTGTGGACCACCACTCGCCAAAAATTGTACTGGAGCAATACCGCCATCACCACTGCCAAGGTCTCAG ACTCATAAAAAAGAAGAAAATGGCGTTATTGATATGGAGGCTTTCTATGTGACATTTTCAGTGGCATACATCATGGTCCTGTTGGCAATAGGTGCAGTTC TCTACATAAACCCGCAATGGCGACAAGCATGGTTTTATTTTATTGGGCAGAGCATCAATAATTGCTATTACTTTCTTGTGGACAATTTACCAGTGCCAGC CAGGTTCAGACGATTTCAGCCTTGTGTCTAA
AA sequence Show only first row Show all	>Potri.018G117900.2 pacid=42802237 polypeptide=Potri.018G117900.2.p locus=Potri.018G117900 ID=Potri.018G117900.2.v4.1 annot-version=v4.1 MSLLEVLDLSNNGLSGNIPEQLVENCLSLGVLMLSNNYLKGQLFWKNFNLTYLTELILRGNQLTGILPNSLSNCSALQALDVSLNNLSGKIPRWIGYMSS LQYLDLSENNLFGSLPSNFCSSRMMIEVYLSKNKLEGSLIGALDGCLSLKRLDLSHNYFKGGIPESIGSSLELSVLLLGYNNLEAEIPRQLCELKKLRLI DLSHNNLCGHILPCLQPRSEWYREWDSAPGPSTMLLASAPMPLEDPSVNKSVEITIKSISYSFKGIILNLISGIDLSCNNLTGEIPFELGNLNNIELLNL SHNSLTGPIPPTFSNLKKIETLDLSYNNLNGEIPPQLLNLNSLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLAKNCTGAIPPSPLPRSQ THKKEENGVIDMEAFYVTFSVAYIMVLLAIGAVLYINPQWRQAWFYFIGQSINNCYYFLVDNLPVPARFRRFQPCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117900 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117981 [exp]	1.41	0.9452
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	2.44	0.9217
AT5G25930			Protein kinase family protein ...		Potri.018G088200 [exp]	5.29	0.9182
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211366 [exp]	9.16	0.9431
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029800 [exp]	20.32	0.9208
AT1G76360			Protein kinase superfamily pro...		Potri.002G009400 [exp]	20.85	0.9217
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G007600 [exp]	26.83	0.8963
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029201 [exp]	27.45	0.9025
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	27.65	0.9188
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.001G080900 [exp]	28.91	0.9185

Compare expression of checked genes

Potri.018G117900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.