Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07390 430 / 1e-132 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74190 390 / 5e-119 AtRLP15 receptor like protein 15 (.1) AT1G74170 386 / 4e-117 AtRLP13 receptor like protein 13 (.1) AT1G58190 379 / 4e-114 AtRLP9 receptor like protein 9 (.1.2) AT1G74180 361 / 5e-108 AtRLP14 receptor like protein 14 (.1) AT3G53240 355 / 8e-107 AtRLP45 receptor like protein 45 (.1) AT5G49290 341 / 2e-101 ATRLP56 receptor like protein 56 (.1) AT2G25470 341 / 3e-101 AtRLP21 receptor like protein 21 (.1) AT1G54470 287 / 8e-82 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT5G44700 248 / 3e-67 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G118062 [exp] 1267 / 0 AT1G74190 421 / 1e-129 receptor like protein 15 (.1) Potri.018G120700 [exp] 1254 / 0 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.018G118035 [exp] 1249 / 0 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G117981 [exp] 885 / 0 AT1G07390 307 / 4e-94 receptor like protein 1 (.1.2.3) Potri.018G117900 [exp] 770 / 0 AT1G07390 244 / 7e-72 receptor like protein 1 (.1.2.3) Potri.005G009300 [exp] 665 / 0 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3) Potri.003G026914 [exp] 642 / 0 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3) Potri.018G124400 [exp] 640 / 0 AT1G07390 342 / 1e-101 receptor like protein 1 (.1.2.3) Potri.005G006701 [exp] 635 / 0 AT1G74190 438 / 3e-136 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 570 / 0 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10027856 [exp] 449 / 7e-141 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10042381 [exp] 418 / 5e-129 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027688 [exp] 249 / 2e-68 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006948 [exp] 233 / 9e-64 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 234 / 2e-63 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10003389 [exp] 233 / 6e-63 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10008849 [exp] 231 / 7e-62 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10006825 [exp] 228 / 5e-61 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10036251 [exp] 228 / 6e-61 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G117927.1 pacid=42801991 polypeptide=Potri.018G117927.1.p locus=Potri.018G117927 ID=Potri.018G117927.1.v4.1 annot-version=v4.1 ATGGGATTAAACAGGTTCTCTCTGCCAGCAGTGGCGGTGATAATGATGATTAATGCCATGCTTCTATCACAAGGGTGTTTGGAGGAAGAACGAATTGCTC TTTTGCAAATCAAAACTTCCTTTGGTGACCACCCAAATGACATTCCATCATCGCTCCTCTCTTGGGGAAAAGATGCCCTCTGTTGCAGCTGGGAAGGAGT TACCTGCAGCAATTCCACTACAAGACGAGTCATCGAAATCAATCTTTACTTCACAAGATATTGGTCATTGGAAGATTTGTACCTAAATGCATCTATATTT CTTCCCTTCCAAGAACTCAATGTTCTTGACTTGAGTGGAAATGGCATAGCTGGCTGTGTTGCGAATGAAGGTTTCGAAAGACTATCAAGACTTGCCAAAT TGGAGGTTCTTTCTTTGGGTGATAATTTCCTCAACAATAGCATCTTATCATCCTTTAAAAGGTTTTCATCTCTCAAACATCTATATCTTGATAACAACGG GTTCCAAGATTCAATAGATATGAAAGAATTTGATTCATTGAGAAACTTGAAGGAGCTATCACTGAGTCAAAATGGGATCCAAGATTTTATAACCTTAACA GGCTCTGAAGGACCATCAAGGCTTAACAAATTGGAAAGTCTTAATTTAAGCTCAAATTACCTGAACGATAGCACCTTATCATTTCTCAAAGGGCTTTCAT CTCTCAAATATCTATATCTTGATTATAATCAGTTATATGGATCAATAAATACAAAAGAATTTGATTCATTGAGCAACTTGAAGGTGCTATCGCTGTTCAG AAATAAAATCCAAGATTTTGTAACCTTAACAGAAATTGATTCTCTGAGCAAGTTGGAGGTTCTAAGCCTAAGCAAAAATAGTATCCATAGTTTCTCTAAA TCTAGAGAAAATACAGGTTTTAGCAACTTAAGCATTCTCTATCTAGATTATGTCTTCAGTGAAGCCCGTGTTTTTATACTACAATCACTGAGCGCATTCC CAAACCTTAAAGTTCTTTCTATGCGATACTATGATCTTTTTAACATACATGGTCAAGGGATATTGCCGAACCTCAAGTTTCTAGAACGACTGGACTTGAC CGAGTCATCCCTTGTCAACTATAACTTCTTTCAAACAGTTGGAAAGTTTACCTCTCTCAAGAGCTTAATTTTGCCCAACAGCGGACTTAGTGGCCCCATA TCTGCTCCCCATGGCCTTTGTGAGTTAAAACATCTCCACGAGCTAGATATCAGCCACAACGATCTCAATGGTTCTTTACCTTCGTGCCTCTTGAATTTGA CAAACCTTCAAGCTTTAGATATCTCTTTCAACAACTTCACAGGGAATATATCCTTGAGTCCCATTGGAAGTCTCGTTTCCATTCAAGATCTAAATATTTC AGACAATCACTTCCAAATCCCTATCTCACTTGGCCCATTTTTTAACCTTTCAAAACTCAAGCATTTGAATGGTGACCGTAATGAGATATACGAGTCAACA GAGCTGGTACACAATTTGATTCCAAGGTTCCAGTTACAGAGGCTTTCTTTGGCATGTACTGGATCCGGTGGGACATTTCCGAAATCCCTGTACTATCAGC ATGACCTTCAATTTGTTGATCTCTCACACATCAAAATGACAGGAGAATTTCCGAGCTGGTTGTTACAAAACAACACAAAACTCGAAGGGTTTTATTTGGT CAACAATTCCCTTTCAGGATCTTTCCAATTAGCAAATCATTCCCTTGTGAGGTTGTCACATTTGGATATCTCGAGAAATCGCATCTACAATCAAATTCCC ACCGAAATTGGAGCATGTTTCCCGAGGTTAGTGTTTTTGAACCTATCCAGAAATGATTTCTGTGGTAGCATTCCCTCTTCGATCAGCAATATGAGCCTCT TGGAAGTCTTAGATTTGTCCAATAATGGCTTGTCAGGCAACATACCCGAGCAGTTGGTGGAAAACTGTTTATCATTACGTGTTCTCATGCTTTCAAATAA TTTTTTGAAAGGCCAGTTTTTCTGGAAAAATTTCAACTTAAAATACTTTACCGAGCTGATATTAAGAGGGAATCAGTTAACCGGGATTCTTCCGAATAGC TTATCTAATTGTTCTGCATTGCAAGTATTGGATGTCAGTCTCAACAATTTGTCTGGTACGATACCGAGATGGATAGTGAATATGTCTTCTCTTCAATATT TAGACCTTTCAGAGAACAATTTTTTTGGAAGTCTACCATCCAACTTTTGTTCTTCATGGATGATGACAGAAGTTTATTTATCAAAAAATAAACTAGAAGG ATCACTGATTGGTGTACTCGATAGCTGTTTGTCGCTGAAGAGATTAGATCTTAGCCATAATTATTTTAGAGGTGGCATTCCCGAGTCAATTGGTTCTTTG TCACAGTTGAGCTTTCTTTTTTTAGGTTATAATAATCTAGAAGCTGAAATCCCAATACAGCTATGCGAACTAAACAAATTAAGCTTGATTGATCTTTCTC ATAATAATCTGTGTGGTCATATTCCTCCATGCCTAGATCCTAGAAGCGAGTGGTATAGGGAAAGTTACAATGCTTCAGGTCCTTCTATTACGTTGTCAGC ATTTGCTCCTATGCCTTTGGAAGATCCTTCAGTTAATAAATCTGTTGAGATTACAACAAAGAGTATATCGTATTCATTCAAGGGAATCATCCTCACTTAC ATCTCCGGTATCGATCTCTCCTGCAACAATTTGACAGGAGAGATTCCGTTTGAGCTTGGATATCTTAGCAACATCCAGATGTTGAATCTATCCCATAATA GTTTAACAGGTCCAATACCACCTACATTTTCAAACCTGGCGGAAATTGAAAGCTTGGATCTTTCCTACAACAACTTGAATGGGGAAATTCCTCGTCAACT TATTGACTTAAACTTCCTATCTGCTTTCAGTGTAGCCCACAATAACTTATCTGGCAAAATACCAGAGATGGTTGCACAATTCTCAACATTTAAGAAGTCT ACCTATGAGGAAAATCCATTGCTTTGTGGACCACCACTCACCAATAATTGTTTTGGAGAAATATCACCATCATCGTTGTCATGGTATCAGACTGACAAAA AAAAAGAAAACAGTTTCATTGATATGGAGGCTTTCTATGTGACTTTTTCAGTGGCATACATCATGGTTCTGTTGGCAATAGGTGCAGTTCTATACATAAA CCCACAATGGCGACAAGCATGGTTTTACTTTATTGAGGAGAGCATCAATAATTGCTATTACTTTCATGTGGACAATCTACCTGTGCCAGCCAGGTTCAAA CGATTTCAGCCTTGTGTCTAA
AA sequence Show only first row Show all	>Potri.018G117927.1 pacid=42801991 polypeptide=Potri.018G117927.1.p locus=Potri.018G117927 ID=Potri.018G117927.1.v4.1 annot-version=v4.1 MGLNRFSLPAVAVIMMINAMLLSQGCLEEERIALLQIKTSFGDHPNDIPSSLLSWGKDALCCSWEGVTCSNSTTRRVIEINLYFTRYWSLEDLYLNASIF LPFQELNVLDLSGNGIAGCVANEGFERLSRLAKLEVLSLGDNFLNNSILSSFKRFSSLKHLYLDNNGFQDSIDMKEFDSLRNLKELSLSQNGIQDFITLT GSEGPSRLNKLESLNLSSNYLNDSTLSFLKGLSSLKYLYLDYNQLYGSINTKEFDSLSNLKVLSLFRNKIQDFVTLTEIDSLSKLEVLSLSKNSIHSFSK SRENTGFSNLSILYLDYVFSEARVFILQSLSAFPNLKVLSMRYYDLFNIHGQGILPNLKFLERLDLTESSLVNYNFFQTVGKFTSLKSLILPNSGLSGPI SAPHGLCELKHLHELDISHNDLNGSLPSCLLNLTNLQALDISFNNFTGNISLSPIGSLVSIQDLNISDNHFQIPISLGPFFNLSKLKHLNGDRNEIYEST ELVHNLIPRFQLQRLSLACTGSGGTFPKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEGFYLVNNSLSGSFQLANHSLVRLSHLDISRNRIYNQIP TEIGACFPRLVFLNLSRNDFCGSIPSSISNMSLLEVLDLSNNGLSGNIPEQLVENCLSLRVLMLSNNFLKGQFFWKNFNLKYFTELILRGNQLTGILPNS LSNCSALQVLDVSLNNLSGTIPRWIVNMSSLQYLDLSENNFFGSLPSNFCSSWMMTEVYLSKNKLEGSLIGVLDSCLSLKRLDLSHNYFRGGIPESIGSL SQLSFLFLGYNNLEAEIPIQLCELNKLSLIDLSHNNLCGHIPPCLDPRSEWYRESYNASGPSITLSAFAPMPLEDPSVNKSVEITTKSISYSFKGIILTY ISGIDLSCNNLTGEIPFELGYLSNIQMLNLSHNSLTGPIPPTFSNLAEIESLDLSYNNLNGEIPRQLIDLNFLSAFSVAHNNLSGKIPEMVAQFSTFKKS TYEENPLLCGPPLTNNCFGEISPSSLSWYQTDKKKENSFIDMEAFYVTFSVAYIMVLLAIGAVLYINPQWRQAWFYFIEESINNCYYFHVDNLPVPARFK RFQPCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117927 [exp]	0	1
AT4G03230			S-locus lectin protein kinase ...		Potri.019G120000 [exp]	1.00	0.9807
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G144600 [exp]	2.44	0.9773
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	3.87	0.9768
AT1G76980			unknown protein		Potri.005G064700 [exp]	4.00	0.9602
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039300 [exp]	5.19	0.9652
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	5.47	0.9650
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016112 [exp]	7.00	0.9692
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G065300 [exp]	7.34	0.9593
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G011600 [exp]	8.12	0.9706
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	8.36	0.9749

Compare expression of checked genes

Potri.018G117927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.