Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07390 308 / 3e-94 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74190 279 / 2e-83 AtRLP15 receptor like protein 15 (.1) AT3G53240 267 / 2e-79 AtRLP45 receptor like protein 45 (.1) AT1G74170 269 / 3e-79 AtRLP13 receptor like protein 13 (.1) AT1G58190 244 / 2e-70 AtRLP9 receptor like protein 9 (.1.2) AT2G25470 243 / 4e-70 AtRLP21 receptor like protein 21 (.1) AT1G74180 234 / 8e-67 AtRLP14 receptor like protein 14 (.1) AT5G49290 233 / 1e-66 ATRLP56 receptor like protein 56 (.1) AT1G54470 219 / 2e-61 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT3G28040 175 / 2e-46 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G117927 [exp] 866 / 0 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.018G118062 [exp] 843 / 0 AT1G74190 421 / 1e-129 receptor like protein 15 (.1) Potri.018G118035 [exp] 825 / 0 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G120700 [exp] 821 / 0 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.018G117900 [exp] 796 / 0 AT1G07390 244 / 7e-72 receptor like protein 1 (.1.2.3) Potri.001G063700 [exp] 474 / 7e-158 AT2G25470 357 / 9e-109 receptor like protein 21 (.1) Potri.018G145522 [exp] 436 / 2e-143 AT2G25470 338 / 6e-102 receptor like protein 21 (.1) Potri.003G025100 [exp] 403 / 1e-129 AT1G74190 432 / 2e-135 receptor like protein 15 (.1) Potri.003G026914 [exp] 404 / 1e-128 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 420 / 3e-137 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 255 / 3e-74 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 247 / 1e-71 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10006948 [exp] 184 / 6e-50 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10036251 [exp] 179 / 1e-47 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10016326 [exp] 178 / 3e-47 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10038726 [exp] 176 / 1e-46 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10026415 [exp] 175 / 2e-46 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10016384 [exp] 174 / 3e-46 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10027688 [exp] 174 / 8e-46 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G117981.1 pacid=42801420 polypeptide=Potri.018G117981.1.p locus=Potri.018G117981 ID=Potri.018G117981.1.v4.1 annot-version=v4.1 ATGACAGGAGAATTTCCGAGCTGGTTGTTACACAACAACACAAAACTCGAAGAGCTTTATTTGGTCAACAATTCCCTTTCAGGATCTTTCCAATTAGCAA ACCATTCCCTTGTGAGACTGTCACATTTGGATATCTCGAGAAATCACATCCACAATCAAATTCCTACTGAAATTGGAGCATGTTTCCCGAGGTTAGTGTT TTTGAACCTGTCCAGAAATGATTTCGATGGTAGCATTCCCTCTTCGATCAGCAATATGAGCCTCTTGGAAGTCTTAGATTTGTCCAACAATGGCTTGTCA GGCAACATACCTGAGCAGTTGGTGGAAAACTGTTTATCATTAGGTGTTCTCATGCTTTCAAATAATTATTTGAAAGGCCAGCTTTTCTGGAAAAATTTCA ACTTAACATACTTGACGGAGCTGATATTAAGAGGGAATCAGTTAACCGGGATTCTTCCGAATAGCTTATCTAATTGTTCTGCATTGCAAGCATTGGATGT CAGTCTCAATAATTTATCTGGTAAGATACCGAGATGGATAGGGTATATGTCTTCTCTTCAATATTTAGACCTTTCGGAGAACAATCTTTTTGGAAGTCTA CCATCCAACTTTTGTTCTTCAATGATGATGATAGAAGTTTATTTATCAAAAAATAAACTAGAAGGATCACTGATTGGTGCGCTCGATGGCTGTTTGTCTC TGAAGAGATTAGATCTTAGCCATAATTATTTTAGAGGTGGCATTCCCGAGTCAATTGGTTCCTTGTTAGAGTTGAGCTTTCTTCTTTTAGGTTATAATAA TCTAGAAGCTGAAATCCCAAGACAGATGTGCGAACTAAAGAAATTAAGCTTGATTGATCTTTCTCATAATAATCTGTGTGGTCGTATTCTTCCATGCCTA CATCCTAGAAGCGAGTGGTATAGGGAATGGGAAAGTGCTCCTATGCCCTTGGAATATCCTACTGTTAGTAAATATGTTGAGATTACAACAAAGAGTATAT CCCATGTTGATAAATTTGTTGAGATTACAATGAAGAGTATATCGTATCCAGTCAACGGAATCATCCTCAATTTGATCTCTGGTATCGATCTCTCCTGCAA CAATTTGACAGGAGAGATTCCTTTTGAGCTTGGAAACCTCAACAACATTGAGTTGTTGAATCTATCCCATAACAGTTTAACAGGTCCCATACCACCTACA TTTTCAAACCTGAAGGAAATTGAAACTCTGGATCTTTCCTACAACAACTTGAACGGGGAAATTCCTCCCCAGCTTCTGGACTTAAACTTCTTATCTGCTT TCAGTGTAGCCCACAATAACTTATCTGGCAAAACGCCAGAGATGGTTGCACAATTCTCAACATTCAACAAGTCTTGCTATGAGGGAAATCTGTTGCTTTG TGGACCACCACTCGCCAAAAATTGTACTGGAGCAATACCGCCATCACCGGTGCCAAGGTCTCAGACTCATAAAAAAGAAGAAAATGGCGTTATTGATATG GAGGCTTTCTATGTGACATTTTCAGTGGCATACATCATAGTCCTGTTGGCAATAGGTGCAGTTCTCTACATAAACCCGCAATGGCGACAAGCATGGTTTT ATTTTATTGGGGAGAGCATCAATAATTGCTATTACTTTCTTGTGGACAATTTACCAGTGCCAGCCAGGTTCAGACGATTTCAGCCTTGTGTCTAA
AA sequence Show only first row Show all	>Potri.018G117981.1 pacid=42801420 polypeptide=Potri.018G117981.1.p locus=Potri.018G117981 ID=Potri.018G117981.1.v4.1 annot-version=v4.1 MTGEFPSWLLHNNTKLEELYLVNNSLSGSFQLANHSLVRLSHLDISRNHIHNQIPTEIGACFPRLVFLNLSRNDFDGSIPSSISNMSLLEVLDLSNNGLS GNIPEQLVENCLSLGVLMLSNNYLKGQLFWKNFNLTYLTELILRGNQLTGILPNSLSNCSALQALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLFGSL PSNFCSSMMMIEVYLSKNKLEGSLIGALDGCLSLKRLDLSHNYFRGGIPESIGSLLELSFLLLGYNNLEAEIPRQMCELKKLSLIDLSHNNLCGRILPCL HPRSEWYREWESAPMPLEYPTVSKYVEITTKSISHVDKFVEITMKSISYPVNGIILNLISGIDLSCNNLTGEIPFELGNLNNIELLNLSHNSLTGPIPPT FSNLKEIETLDLSYNNLNGEIPPQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNLLLCGPPLAKNCTGAIPPSPVPRSQTHKKEENGVIDM EAFYVTFSVAYIIVLLAIGAVLYINPQWRQAWFYFIGESINNCYYFLVDNLPVPARFRRFQPCV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117981 [exp]	0	1
AT5G25930			Protein kinase family protein ...		Potri.018G088200 [exp]	1.41	0.9415
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117900 [exp]	1.41	0.9452
AT3G47570			Leucine-rich repeat protein ki...		Potri.013G133100 [exp]	6.63	0.8783
AT1G34300			lectin protein kinase family p...		Potri.013G059900 [exp]	12.32	0.8409
AT1G76980			unknown protein		Potri.005G064700 [exp]	13.19	0.9101
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G007600 [exp]	14.69	0.8903
AT5G36930			Disease resistance protein (TI...		Potri.006G282600 [exp]	19.62	0.8404
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	20.49	0.8716
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G011600 [exp]	25.39	0.9029
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G027250 [exp]	25.74	0.8848

Compare expression of checked genes

Potri.018G117981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.