Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 421 / 1e-129 AtRLP15 receptor like protein 15 (.1) AT1G74170 416 / 3e-127 AtRLP13 receptor like protein 13 (.1) AT1G07390 406 / 1e-124 AtRLP1 receptor like protein 1 (.1.2.3) AT1G58190 392 / 2e-118 AtRLP9 receptor like protein 9 (.1.2) AT1G74180 377 / 2e-113 AtRLP14 receptor like protein 14 (.1) AT5G49290 376 / 2e-113 ATRLP56 receptor like protein 56 (.1) AT3G53240 365 / 1e-109 AtRLP45 receptor like protein 45 (.1) AT2G25470 340 / 3e-100 AtRLP21 receptor like protein 21 (.1) AT1G54470 299 / 2e-85 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT5G44700 234 / 9e-63 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G118035 [exp] 1222 / 0 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G120700 [exp] 1222 / 0 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.018G117927 [exp] 1170 / 0 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.018G117981 [exp] 868 / 0 AT1G07390 307 / 4e-94 receptor like protein 1 (.1.2.3) Potri.018G117900 [exp] 747 / 0 AT1G07390 244 / 7e-72 receptor like protein 1 (.1.2.3) Potri.018G120800 [exp] 696 / 0 AT1G74190 261 / 2e-74 receptor like protein 15 (.1) Potri.005G007900 [exp] 631 / 0 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.005G009700 [exp] 628 / 0 AT1G74190 453 / 4e-141 receptor like protein 15 (.1) Potri.001G063700 [exp] 621 / 0 AT2G25470 357 / 9e-109 receptor like protein 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 573 / 0 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 392 / 2e-118 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 342 / 1e-100 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10027688 [exp] 248 / 1e-67 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006948 [exp] 244 / 2e-67 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016402 [exp] 238 / 4e-66 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10003389 [exp] 232 / 2e-62 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10016384 [exp] 231 / 6e-62 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10003387 [exp] 225 / 6e-60 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10038726 [exp] 224 / 1e-59 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G118062.1 pacid=42801152 polypeptide=Potri.018G118062.1.p locus=Potri.018G118062 ID=Potri.018G118062.1.v4.1 annot-version=v4.1 ATGGGATTCAACAGGTTCTCTCTGCCAGCAGTGGCGGTGATAATGATGATGAATGCCATGCTTCTATCGCAAGGGTGTTTGGAGGAAGAACGAATTGCTC TTTTGCAGATCAAAACTTCCTTTGCTGAATACCCAAATCTTAAGTCCCCGGTACTCTCTTGGGGAAAAGATGCCCTCTGTTGCAGTTGGGAAGGAGTTAC CTGCAGCAATTCCACTACAAGACGAGTCATCGAAATCGATCTTTTCTTGGCAAGAGATAGGTCAATGGGAGATTGGCACCTAAATGCATCTATATTTCTT CCCTTCCAAGAACTCAATGTTCTTGACTTGACTGGAAATAGAATAGCTGGCTGTGTTGCGAATGAAGGTTTCGAAAGACTATCAAGACTTGCCAAATTGG AGACTCTTGATTTAAACTTAAATAATTTCAACAATAGCATCATATCATCACTTAAAGGGCTTTCATCTCTCAAACATCTATATCTTGGGTACAACCGGTT GCAAGGATCAATAGACACAAAAGAATTTGATTCATTGAGCAACTTGGAGATGCTATGGCTGTACGAAAATAAGATCCAAGAATTTGTAACTTTAAGAGGC TCTGAAGAACCATCAAGGCTTGACAAATTGGAGACTCTTTATTTGGGTCACAATAACTTCAATAATAGCATCCTATCATCTCTCAAAGGGCTTTCATCTC TCAAATATCTATATCTTGATGGCAACCAGTTGCAAGGATCAATAAACATGAAAGAATTTGATTCATTGAGCAACTTGGAGGTGCTATCGCTGACTGCAAA TGAGATCCAAGAATTTGTAGCCTTAACAGGCTCTGAAGAACCATCAAGGCTTGACAAATTGGAGTTTCTTGATTTGGATGACAATAACTTCAACAATAGC ATCCTATCATCCCTCAAAGGGCTTTCATCTCTCAAACATCTATATCTTGATCACAACCAGTTGCAAGGATCAATAAACATGAAAGAATTTGATTCATTGA GTAACTTGGAGGAGCTATGGCTGGCTGGAAATACGATCCAAGATTTTGTAGCCTTAACAGGCTCTGAAGAACCATCAAGGCTTGACAAATTGGAGACTCT TTATTTGGGTCACAATAACTTCAATAATAGCATCCTATCATCTCTCAAAGGGCTTTCATCTCTCAAATATCTATATCTTGATGGCAACCAGTTGCAAGGA TCAATAAACATGAAAGAATTTGATTCATTGAGTAACTTGGAGGAGCTATGGCTGGCTGGAAATACGATCCAAGATTTTGTAGCCTTAACAGACTCTGAAG AACCATCAAGGCTTACCAAATTGGAGGTTCTTTATTTAAGCTCAAATTACCTCAACAATAGCATCATATCATCCCTTAAAGGGCTTTCATCTCTCAAATA TCTATATCTTGATGGCAACCAGTTGCAAGGATCAATAAACATGAAAGGCCTTTGTGAGTTAAAGCATCTTCAGAAGCTAGATATCAGCCACAACAATCTC AATGGTTATTTGCCTTGGTGTCTCTCGAATTTGACAAACCTTCAAGTTTTAGATATCTCTTTCAACGACTTCACTGGGAATATATCCTTGAGTCCCATTG GAAGTCTCACGTCCATTCAAGATCTAAGACTTTCACACAATCACTTCAAAATCCCAATCTCACTTGGCCCATTTTTTAACCTTTCAAAACTCAAGCATTT GAATGGTGACCATAATGAGATATACGAGTCAACAGAGCTGGTACACAATTTGATTCCAAGATTCCAGTTACAGTGGCTTTCTTTGGAATGTACTGGATCC GGCGGGACATTTCCGAAATCCCTGTACTATCAACATGACCTTCAATTTGTTGATCTCTCACACATCAAAATGACAGGAGAATTTCCGAGCTGGTTGTTAC AAAACAACACAAAACTCGAAGGGCTTTATTTGGTCAACAATTCCCTTTCAGGATCTTTCCAATTAGCAAATCATTCCCTTGTAAGGTTGTCACATTTGGA TATCTCAAGAAATCGCATCCACAATCAAATTCCTACTGAAATTGGAGCATGTTTCCCGAGGTTAGTGTTTTTGAACCTGTCCAGAAATGATTTCGATGGT AGTATTCCCTCTTCGATCAGCAATATGAGCCTCTTGAAAGTCTTAGATTTGTCCAACAATAACTTATCAGGCAACATACCCGAGCAGTTGGTGGAAGGTT GTTTATCATTAGAGGTTATCATGCTTTCAAATAATTATTTCGAAGGGCAGCTTTTCTGGAAAAATTTCAACTTAACATACTTGACAGAGCTGATATTAAG AGGGAATCAGTTAACTGGGATTCTTCCGAATAGCTTGTCTAGTTGTTCTGCATTGGAAGCATTGGATGTTAGTAACAACAATTTATCTGGTAAGGTCCCG AGATGGATAGGGAATATGTCTTCTCTTGAATATTTAGACCTTTCAGAGAACAATCTCTTTGGAAGTCTACCATCTAGCTTTTGTTCTTCAAGGATGATGA CAGAAGTTTATTTATCTAAAAATAAACTAGAAGGATCACTGATTGATGCATTTGATGGTTGCATGTCGCTGAACAGATTAGATCTTAGCCATAATTATTT TAGAGGTAAAATTCCGGAGTCAATTGGTTCTTTGTTCCAGTTGAGCTTTCTTCTTTTAGGTTATAATAATCTAGAAGGTGAAATCCCAAGCCAGCTGTGC AAACTAGAGAAATTAAGCTTGATTGATCTTTCTCATAATAATCTGTGTGGTCATATTCTTTCGTGCCTACAACCTAGCAGCAAGTGGTATCGGGAACGAG AAGCATCTATAAATCCTTCTGATAGTGCTCCAGGTCCTATTATGCCATTTGCCGCTGCTCCTATTCCTTTGGAAGATCCTTCTGTGAATAAAGCTTTTGA GTTTACAACAAAGAGTAGATCTTATTCATTCAAGGGAATCATCCTCACTTACTTCTCTGGTATCGATCTCTCCTGCAACAATTTGACAGGAGAGATTCCT TTTGAGCTAGGATACCTTGGCAACATCCAGGTGTTGAATCTATCCCATAACAGTTTAACAGGTCCAATACCACCTACATTTTCAAACCTGAAGGAAATTG AAAGCATGGATCTTTCCTACAACAACTTGAACGGGGAAATTCCTCGTCAGCTTCTCGAATTAAACTTCCTTTCTGCTTTCAGTGTAGCCTACAATAACTT ATCTGGCAAAACACCAGAGATGGTTGGACAATTCTCAACATTCAACAAGTCTAGCTACGAGGGAAATCCGTTGCTTTGTGGACCACCGCTCACCAATAAC TACATTGGAGAAATATCACCATCACCGTTGCCAAGGTATAAGACTGACAAAAATGAAGAAAACAGCTTCATTGATATAGAGGCTTTCTTTGTGACATTTT CAGTGGCATACATCATGGTCCTGTTGGCAATAGGTGCAATTCTGTACATAAACCCGCATTGGCGACGATCATGGTTTTACTTTATCGGGAAGAGCATCAA TAATTGCTATTTCTATCTTGTAGACAATCTACTTGTGCCAGCCAAGTTCAGACGATTTCAGCCTTGTGTCTGA
AA sequence Show only first row Show all	>Potri.018G118062.1 pacid=42801152 polypeptide=Potri.018G118062.1.p locus=Potri.018G118062 ID=Potri.018G118062.1.v4.1 annot-version=v4.1 MGFNRFSLPAVAVIMMMNAMLLSQGCLEEERIALLQIKTSFAEYPNLKSPVLSWGKDALCCSWEGVTCSNSTTRRVIEIDLFLARDRSMGDWHLNASIFL PFQELNVLDLTGNRIAGCVANEGFERLSRLAKLETLDLNLNNFNNSIISSLKGLSSLKHLYLGYNRLQGSIDTKEFDSLSNLEMLWLYENKIQEFVTLRG SEEPSRLDKLETLYLGHNNFNNSILSSLKGLSSLKYLYLDGNQLQGSINMKEFDSLSNLEVLSLTANEIQEFVALTGSEEPSRLDKLEFLDLDDNNFNNS ILSSLKGLSSLKHLYLDHNQLQGSINMKEFDSLSNLEELWLAGNTIQDFVALTGSEEPSRLDKLETLYLGHNNFNNSILSSLKGLSSLKYLYLDGNQLQG SINMKEFDSLSNLEELWLAGNTIQDFVALTDSEEPSRLTKLEVLYLSSNYLNNSIISSLKGLSSLKYLYLDGNQLQGSINMKGLCELKHLQKLDISHNNL NGYLPWCLSNLTNLQVLDISFNDFTGNISLSPIGSLTSIQDLRLSHNHFKIPISLGPFFNLSKLKHLNGDHNEIYESTELVHNLIPRFQLQWLSLECTGS GGTFPKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEGLYLVNNSLSGSFQLANHSLVRLSHLDISRNRIHNQIPTEIGACFPRLVFLNLSRNDFDG SIPSSISNMSLLKVLDLSNNNLSGNIPEQLVEGCLSLEVIMLSNNYFEGQLFWKNFNLTYLTELILRGNQLTGILPNSLSSCSALEALDVSNNNLSGKVP RWIGNMSSLEYLDLSENNLFGSLPSSFCSSRMMTEVYLSKNKLEGSLIDAFDGCMSLNRLDLSHNYFRGKIPESIGSLFQLSFLLLGYNNLEGEIPSQLC KLEKLSLIDLSHNNLCGHILSCLQPSSKWYREREASINPSDSAPGPIMPFAAAPIPLEDPSVNKAFEFTTKSRSYSFKGIILTYFSGIDLSCNNLTGEIP FELGYLGNIQVLNLSHNSLTGPIPPTFSNLKEIESMDLSYNNLNGEIPRQLLELNFLSAFSVAYNNLSGKTPEMVGQFSTFNKSSYEGNPLLCGPPLTNN YIGEISPSPLPRYKTDKNEENSFIDIEAFFVTFSVAYIMVLLAIGAILYINPHWRRSWFYFIGKSINNCYFYLVDNLLVPAKFRRFQPCV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G118062 [exp]	0	1
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G120800 [exp]	1.00	0.9346
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.018G152200 [exp]	2.82	0.9227
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413400 [exp]	4.24	0.9342
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024500 [exp]	4.89	0.9273
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.012G038400 [exp]	6.48	0.9145
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	7.74	0.9226
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.002G105000 [exp]	8.12	0.8172
AT1G12880		ATNUDT12	nudix hydrolase homolog 12 (.1...		Potri.003G161100 [exp]	8.66	0.8598
AT2G18193			P-loop containing nucleoside t...		Potri.007G020500 [exp]	8.71	0.8512
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082300 [exp]	12.64	0.8948

Compare expression of checked genes

Potri.018G118062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.