Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32060 279 / 2e-91 calcium-binding EF hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023400 [exp] 309 / 2e-103 AT4G32060 607 / 0.0 calcium-binding EF hand family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040000 [exp] 352 / 8e-120 AT4G32060 481 / 9e-167 calcium-binding EF hand family protein (.1.2) Lus10008807 [exp] 349 / 8e-119 AT4G32060 478 / 8e-166 calcium-binding EF hand family protein (.1.2) Lus10005346 [exp] 288 / 6e-95 AT4G32060 536 / 0.0 calcium-binding EF hand family protein (.1.2) Lus10041027 [exp] 166 / 7e-51 AT4G32060 167 / 4e-49 calcium-binding EF hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.018G118116.1 pacid=42800802 polypeptide=Potri.018G118116.1.p locus=Potri.018G118116 ID=Potri.018G118116.1.v4.1 annot-version=v4.1 ATGGGTGAGTTGCTTGTAGTTTCAAGATCTATGTGCAGTTGGCAGGTGACCAGACCAGGAAGCTACTCAAAACAAATTGATAGAGAAGAATTTAAGAAAG TGATGGGTTTAATGAGAGCTCAAAACAGGCAAGGGGCAGGCCTCAGAGATGGAAGGAGATTTGGGTTGAAAGTAGCAGAGCCTGTGGAGAATGGTGGCCT CTTAGAATACTTCTTTGGCAAAGATGGCAGGACCTGTCTCCAACATGAAAGATTTGTCCAATTTTTGAGGGACTTGCATGATGAAATTTTACAGCTGGAA TTCGCCCATTATGATTACAGATCATGTGGTACTATATCAGCTAAAGATTTTGCCTTGTCCTTGGTTGCATCAGCTGACATTAGACACATTAGCAAGCTAC TCGATCGGGTAGATGAAGTAAGCAATGAACCACAGATAAGAGACATACGAATTACATTCGAGGAGTTCAAAAGCTTCGCAGAGATACGTAGACAGTTGCA GTATTTATCTCTCGCCATTTTTAGCTATGGAAAAGTGAATGGGGTGTTAACGAGAAAAGATTTCCAGAGAGCTTCATCGCAGGTATGCGGCATCTCCATC ACCAATTATTTGGTTGACATAACATTCCATGTCTTCGAGGCTAATCGCGATGGGAACTTGAGTTCGGATGAGTTTGTAAGAGTTCTGCAGGGACGTGAGA CGGCAAGCCGGATCGCTAGAGAACCAGGATTGAAGGGATTGATGTCTTGTTGTGCAAACTGCGCCAAAAAATACTCATCTGCAAAGCGTCTCCTCTAA
AA sequence Show only first row Show all	>Potri.018G118116.1 pacid=42800802 polypeptide=Potri.018G118116.1.p locus=Potri.018G118116 ID=Potri.018G118116.1.v4.1 annot-version=v4.1 MGELLVVSRSMCSWQVTRPGSYSKQIDREEFKKVMGLMRAQNRQGAGLRDGRRFGLKVAEPVENGGLLEYFFGKDGRTCLQHERFVQFLRDLHDEILQLE FAHYDYRSCGTISAKDFALSLVASADIRHISKLLDRVDEVSNEPQIRDIRITFEEFKSFAEIRRQLQYLSLAIFSYGKVNGVLTRKDFQRASSQVCGISI TNYLVDITFHVFEANRDGNLSSDEFVRVLQGRETASRIAREPGLKGLMSCCANCAKKYSSAKRLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32060			calcium-binding EF hand family...		Potri.018G118116 [exp]	0	1
AT1G24160			unknown protein		Potri.013G101300 [exp]	4.47	0.8093
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G037100 [exp]	4.47	0.7742
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.010G009400 [exp]	22.31	0.7852
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Potri.004G086300 [exp]	35.91	0.6831
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	38.88	0.7722
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045500 [exp]	41.35	0.7687
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.014G019100 [exp]	45.16	0.7557
AT5G56420			F-box/RNI-like/FBD-like domain...		Potri.016G106600 [exp]	48.28	0.7526
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.002G049500 [exp]	50.59	0.6726	Pt-SULTR3.2
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045800 [exp]	51.43	0.6674

Compare expression of checked genes

Potri.018G118116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.