Plant FIBer expression Database

Potri.018G118143 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G12550 571 / 0 NUB1 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G061500
[exp]
885 / 0 AT2G12550 577 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008818
[exp]
620 / 0 AT2G12550 616 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Lus10039971
[exp]
517 / 7e-179 AT2G12550 563 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0072 Ubiquitin PF00240 ubiquitin Ubiquitin family
CL0214 UBA PF00627 UBA UBA/TS-N domain
Representative CDS sequence
>Potri.018G118143.1 pacid=42801827 polypeptide=Potri.018G118143.1.p locus=Potri.018G118143 ID=Potri.018G118143.1.v4.1 annot-version=v4.1
ATGTCTTCTTCTTCTCCTGCTTCAATTGCAAAGCTGAAGGTAGCAGGGACATGGGCAGGACTGTTAGAGGTAGAAACAGAGAATTGGACTGTGCCCATGT
TGAGAGAAGAGATTGCAAAGAGATCAAACATGGGTACTGAGTCGATCAACCTAATTTTTGCTGGCAAAGTTTTGAAAGACTGTACTAGTGAGGACAAAAG
CAGTCTTTCTCAGCTGGGTATTAAAAATAACTCTAAAATTCTTGCTTGTCGTGTCTCTGTTGAGGAGGGTAAAACTTTAAAGAGTGAATTGTTGGCTGAT
GATGAAAGGAACCGTAGACTTGCTCGTATTAGGGCAGCTGTTACTGCATTGTCCAAGAGGCATGCAGATGGTGCATTACCTATAGAAGACTTCGATATTG
AACTTGAAGATCAGAGTGGGAAGAAAGTGCACTTTTCTGAGACTGATAGACTGGCAATAATGACAGGTCTGATGCTCCATACAAGTGGAAAGCGATTTAT
CAGAAAGCAAATGTTTACTGATGCACTAGAAGTTCTTACTATGGGAGAGGAGGCTTTCTCTCTATGCAATCCCAAGTCCATTGAACTTGTTGACAATATT
CCAATACTGCAAATAGACATGGTCTGGTGTTACTTCATGCTCCGAGATATTGCCTGGATTGCAGTGGCAGGATTACGCCTCAAAAAGGCTAGAGAAGGAC
TTGAGCGTGCTCATGGAAAGGACTCCTCCCGATTCAGACTGCTTCAAGCTGGTCGTACTTCAGAGCTCGCATTATATTTGCGATTGGAATTGTTGGAAGG
AGTGGTGGCTTATCACAGTGGCCAGTTCAACAAATCTAGGAAGTTCTTGGCTTCTGCACAAGAAAAGTTCTTCCAGCTACAAGTGCCAGATGAAGCCTTA
TCACTTGTCATGAGCATGGGCTTTGGGGAATGGGATGCAAAACGAGCATTAAGAATGAGCAATCAGGATATTCAGAGTGCTGTTAATTTTCTTGTAGTGG
AAAGGGAAAAGAGAGAACAGAAAAGGGAAGATGACATTCGTCGAAGAAATGAAATAATGGAGCAGAAACGGTATGGAGTTACACCCTTAAAGAAAGCTGT
GGATCTCCAAAGACTGACAGAGGTGGTCTCCATAGGGTTTGAGAAGGAGCTAGCTGCTGAAGCTCTTCGAAAAAATGAGAATGATACTCAAAAAGCATTG
GATGACTTGACAAATCCAGAAGCTAATACTGCACTTCAGCGTAATATAGAATTGAGGAAAAGGAGAAGACAGCAACGAGCCACTGATGCCACCATTGAAC
GGCTTGTGTCCATGGGCTTTGAAAGATCAAGAGTGATTGGTGCTGTCCAAGCTGGTGGTTCTTTAGAGCAAGCCATGCATCAACTGCTCACACATTCCAG
AGCAGATACCACTGTTGCTGCTGAAAACAGTGCAAATGCTCATGTTTCAGCTGTTAACAATAATGCTAGTGCTCCTGATTCAACTCCTACCGACCTTGCT
CTGGATAATCTGGATCCAGATGCCCTGGATATTGATTGTAGTAATGAAGGTCCATCAGCTGCTGAAATTGAACAGCGGGATGTGGAGATGGAGGGTGAAA
TTGCTGATGAACTAGCGAGAGGCGATGCATTGTCTGATTATGACATTGAAGTAGCCAAAGAAGGGGAGGCCATCAATGAGTACCTCGCTTTGCTGGCGTC
AGCGGATGGCACTTCGTCTTCCCAATCTTCCCAGTAA
AA sequence
>Potri.018G118143.1 pacid=42801827 polypeptide=Potri.018G118143.1.p locus=Potri.018G118143 ID=Potri.018G118143.1.v4.1 annot-version=v4.1
MSSSSPASIAKLKVAGTWAGLLEVETENWTVPMLREEIAKRSNMGTESINLIFAGKVLKDCTSEDKSSLSQLGIKNNSKILACRVSVEEGKTLKSELLAD
DERNRRLARIRAAVTALSKRHADGALPIEDFDIELEDQSGKKVHFSETDRLAIMTGLMLHTSGKRFIRKQMFTDALEVLTMGEEAFSLCNPKSIELVDNI
PILQIDMVWCYFMLRDIAWIAVAGLRLKKAREGLERAHGKDSSRFRLLQAGRTSELALYLRLELLEGVVAYHSGQFNKSRKFLASAQEKFFQLQVPDEAL
SLVMSMGFGEWDAKRALRMSNQDIQSAVNFLVVEREKREQKREDDIRRRNEIMEQKRYGVTPLKKAVDLQRLTEVVSIGFEKELAAEALRKNENDTQKAL
DDLTNPEANTALQRNIELRKRRRQQRATDATIERLVSMGFERSRVIGAVQAGGSLEQAMHQLLTHSRADTTVAAENSANAHVSAVNNNASAPDSTPTDLA
LDNLDPDALDIDCSNEGPSAAEIEQRDVEMEGEIADELARGDALSDYDIEVAKEGEAINEYLALLASADGTSSSQSSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G12550 NUB1 homolog of human NUB1, ubiquit... Potri.018G118143
[exp]
0 1
AT1G56220 Dormancy/auxin associated fami... Potri.013G014900
[exp]
2.82 0.7640
AT2G26850 F-box family protein (.1) Potri.006G040000
[exp]
4.24 0.7690
AT1G07110 FKFBP, ATF2KP, ... "fructose-2,6-bisphosphatase",... Potri.009G073800
[exp]
5.29 0.7642
AT4G32295 unknown protein Potri.018G027100
[exp]
7.74 0.7432
AT5G05700 ATATE1, DLS1, A... DELAYED LEAF SENESCENCE 1, arg... Potri.008G067000
[exp]
8.66 0.7296 Pt-ATE1.3
AT3G22970 Protein of unknown function (D... Potri.010G080600
[exp]
9.38 0.7608
AT1G52540 Protein kinase superfamily pro... Potri.003G032100
[exp]
9.79 0.7597
AT2G23460 ATXLG1, XLG1 extra-large G-protein 1 (.1) Potri.005G131200
[exp]
9.89 0.7575 XLG.1
AT5G16970 AT-AER alkenal reductase (.1) Potri.017G004032
[exp]
11.40 0.7750
AT5G03860 MLS malate synthase (.1.2) Potri.015G092000
[exp]
12.80 0.8030

Potri.018G118143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.