Plant FIBer expression Database

Potri.018G118200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G35080 333 / 4e-115 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G061600
[exp]
542 / 0 AT5G35080 343 / 5e-119 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008819
[exp]
454 / 9e-163 AT5G35080 358 / 3e-125 unknown protein
Lus10039972
[exp]
454 / 1e-162 AT5G35080 357 / 2e-124 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0226 M6PR PF07915 PRKCSH Glucosidase II beta subunit-like protein
Representative CDS sequence
>Potri.018G118200.1 pacid=42801975 polypeptide=Potri.018G118200.1.p locus=Potri.018G118200 ID=Potri.018G118200.1.v4.1 annot-version=v4.1
ATGAGATTTTTGTGGTTAATTGTGGTGTTATACACTGTATGCAACCATGTTTTAGCTGATCAGATCTTCCCTGGTCATGTAGGTGCTACATTTCGCAGTT
CTCGTGAACCTAAATATCAGATCGACTTTCATTCAGAAGACTCTCCTTTTCTTCCTGATGATGACCAGGAGTCAATAGTTATACCCAACAAAAATGGTGA
GAATTATTTATGCTTCTTGCCTAAGGTGGAGAAAGCCAAGAGTGAAAAACCAATTACTCAGCTAAATATAAGCAGCATGATTGTGGAAACTGAGGAACGG
GTTAAATTGAAGACACCAGATGAGCTGCTTGAAGTATTGAAAGGCTCATGCTTTGTCAGACAAGAGGGTTGGTGGTCTTATGAGTTATGCTATCAGAATA
AAATAAGGCAATTCCATGTGGAGGATGAAAAGGAAAAGGCTGTCCAAGAATTTATCTTGGGTGTGTATGATGAAGAAGCCACGGCTGCATTCAACCAGAA
TCTTTCTGACATTTCTACATTGAAGGATCATCGTTCAAAAGATGCATCTCAAAGGTATCATGCTCATCAGTATACAAATGGAACCATATGTGATCTTACA
AATGAGCCACGAGAAACTGAGGTGAGATTTGTATGCTCAGAGCCCAGAGCTATGATTAGTTCTGTCATTGAGCTATCCACGTGCAAGTATGCTCTTACAG
TGCAGTCTCCAATGCTTTGCAAGCACCCATTGTTTCAAGAAGAGAGACCAGTGTGGCACACCATTAATTGCAACCTTCTTCCCAAGGATTACAAAGAAGC
TAAGCCAGATGAAGTCGAAACCGAAGATGAGCAGATTTTTATGGTGTCTGACGTTGAATCATCTAACTATGATTCAGATGAATAA
AA sequence
>Potri.018G118200.1 pacid=42801975 polypeptide=Potri.018G118200.1.p locus=Potri.018G118200 ID=Potri.018G118200.1.v4.1 annot-version=v4.1
MRFLWLIVVLYTVCNHVLADQIFPGHVGATFRSSREPKYQIDFHSEDSPFLPDDDQESIVIPNKNGENYLCFLPKVEKAKSEKPITQLNISSMIVETEER
VKLKTPDELLEVLKGSCFVRQEGWWSYELCYQNKIRQFHVEDEKEKAVQEFILGVYDEEATAAFNQNLSDISTLKDHRSKDASQRYHAHQYTNGTICDLT
NEPRETEVRFVCSEPRAMISSVIELSTCKYALTVQSPMLCKHPLFQEERPVWHTINCNLLPKDYKEAKPDEVETEDEQIFMVSDVESSNYDSDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G35080 unknown protein Potri.018G118200
[exp]
0 1
AT4G38500 Protein of unknown function (D... Potri.004G177600
[exp]
2.64 0.9040
AT2G30700 unknown protein Potri.007G133733
[exp]
3.46 0.9094
AT2G32580 Protein of unknown function (D... Potri.014G155600
[exp]
5.56 0.9222
AT2G38580 Mitochondrial ATP synthase D c... Potri.006G110400
[exp]
6.24 0.8770
AT2G04660 APC2 anaphase-promoting complex/cyc... Potri.008G089100
[exp]
6.32 0.8988 APC2.2
AT2G21870 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, ... Potri.005G085500
[exp]
7.74 0.9154
AT2G20410 RNA-binding ASCH domain protei... Potri.013G045800
[exp]
10.09 0.8777
AT3G07950 rhomboid protein-related (.1) Potri.010G220900
[exp]
10.39 0.9187
AT1G17170 ATGSTU24 Arabidopsis thaliana Glutathio... Potri.001G436433
[exp]
11.18 0.9096
AT4G25680 PPPDE putative thiol peptidase... Potri.017G143132
[exp]
12.96 0.8865

Potri.018G118200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.