Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20060 709 / 0 EMB1895 EMBRYO DEFECTIVE 1895, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036232 [exp] 852 / 0 AT4G20060 651 / 0.0 EMBRYO DEFECTIVE 1895, ARM repeat superfamily protein (.1) Lus10038371 [exp] 395 / 7e-125 AT4G20060 308 / 5e-93 EMBRYO DEFECTIVE 1895, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G118800.1 pacid=42801697 polypeptide=Potri.018G118800.1.p locus=Potri.018G118800 ID=Potri.018G118800.1.v4.1 annot-version=v4.1 ATGGAGAGGATTTCTGCAGCTTGTGCTATGGAATGGAGCATTGAGCTTGAGAAGGCCCTTCGCTCTAAAAAACCTGGACAAGCTATTGAGGGCATACAAC GAATTGGCAAAAGAATTCAGGAGTGGAGTAAAGAACCCAAACCAACTATGGCAGTTTATAACATGTTTGGGTTAGTTACAGGAGAGGATACGCTCTTTGC CAATACAATTCTATTACGGCTTGCTGATGCATTCAGGTTTGGTGACAGAGAAACAAGGGTTTCTATAGTAAAGGTTTTCTTGTTGGAGCTCAAGAGCCGT GATAATAAGAAAATGAAAGGTAGACAGTATAGAGGGATTTTGTCAAAGGACAGGGTGCAAAATCATGTGGAACTTCTGAAAAGAGTTAAAATAGTTTTTG ATACCGGAGATGTTGATTCAAAGGCCTTGGCATTGGCTCTCTTTGGCTGTTGGGCTCCTTTTGCAAAAGACAGCGCTCATATACGATACCTCATACTTTC CAGTATGATCTCCTCTGATGTTTTGCAGGTACAGGCGTCATTATTTGCTGCAGGTTGCTTTTGTGAGTTGGCAGGTGACTTTGTCCCTGTTGTCTTAGAG ATGTTGGTTAATATGGTCACTTCATCTGAAACATTGTTGACCATAAGATTAGCTGGAACACGAGTTTTTGCTAAAATGGGGCCCTCATATTCTGTTGCAA GTAGAGCCTACAAGACAGGCCTAAAGTTGTTAGACTCTTTGGAAGAAGACCTTGTGGTTACAATGCTGGTTTCTCTCACAAAACTTGCATCAAAATCAAC CCTTCTATTATTGGAACAGGTGGATTTGCTTTTACCGTTCCTTAGCCAAGAGAAAGATTTGCTATTTCAAGCAACAGCTTTAAGATGCCTTCACTTCATA TTTATGAGAGGAGTTGTTTACTCTTCTGTCAGTGCACATGGAATCAAAACATTTTCCAGAATTGTAGACGAAGCTGACCTTCCATTATCCATGCAATGCG AAGCTTTACAAATTCTGCATAAGATGCTTTTATATAGACTACATAATCTACCTCAAGACAACATGCTTGAATTATCTCCTCTTTTGACTATCATTGAGAA TTCAGCCGAGTCTTCTATTATGTCAAAGAGCCTTCTAGCCATACATGTTCAAGCAGATTTATCAATGAAGCTCAGCAGAAGAGCTGAAATGGAATCTGGT GGGAATTCTTTCTCTCCTCTGCTAACACGAACCATCTCCATAATTATTGATCGGGTTATTTTGCTGGTGAAGCCATTGTTAGTTCTCTGCCAGGCTGGTG CAGGAGTCCTTCAGGAAGTTCAAAGCCTGCTCAGTCTTTTACTTTCTTTGGTTAGAGAACATCCAGATCTGGGTGTCTCTGTACTGGATAAAGTTAGGTT ATTTATTGAGTATCTTGTGGATGTACATGAAGGCAACATAGTTATAAGGCAAGAAAGTTTATCAGTTCCAGAGGTTTTTGACTTTAAAGGAGAAAATGTG GGCATTAGTTTGAAGCTGGCATATTATGTCCATAAATTTTCTGTTAGTTGCGTTGAAATTATGAATGAAGCTGGTGCCATCACCACCCAATTAGTTGACA AAGTAAAGCTTTTAGTTCAGTCTGTGCATCGCTGCGGTTTATTTCATTGGTATGTACTTATAATGTACTCCATACTGCTGCACTCTCATTCCATGTGGAG TTATGTAGTTCATAACAAGAAGGAAAGTTGCAATCCTGATAGCAACTTGAATTGTTCACTTTGTAGAGAGTTGGTTGAGCGTGAATTTTTCACCCTTGAT TGTGCAAAAAAACTGCTGACAGAGAGGGATAACTGGTCTGCTTATAAAGCTGGGACATTTGCAGCATGTCAGGGAGCATGGATCACAGCTGCATTTGTAT TTGAGCAACTAACAAGTAAGGTTCAGTCTGGATCCTGCTCTTGCTGGCTAAAATCATTAACTCAATTTGCTCAAACTGAGAGTAAATTCCAGTTCTATCC CATAACACAATGGGGTTTCAGTTTGGCAGATCGGTCAAAGATGAATGAATTTCCAGTTATGTTTTTCCAGGACTTTTCTGATGAACTTGGTCAAGGTGCT GTTGAGAATATCCGTGACCCTAATTATACTGAAATGCTTCGTCAGGCTCATCATGGACTTTGTTCTTCAAGGAAAACATTAGAATCCATTGTCACATCCG ATAAATCATTCTGTTTCCAGAGATGGTTTTTAGCTATAAGGATGGAACTTCTAGGAACTATGGCGGATGTTGTTAAAGTCTTGGGTGCCACCCCACTTAG TGAGGACAGTATTAGCAACAGTAGAAAGGGTGAGAAAAAAGATGAGTATCTCAACTCTTTGCGACAAATTACTCAATCATCTTTCCGGTTGAACAGGCTG GTGCAGGAATATGATTTAATTTCCATGTCTTTCATTGGAATGGACAGCAGAAGTTCAAAGATCATTTCTACACTTGCATTAAGTTGTTTGCTGTTGGCTT TTGCTACTGGATTTGCTATTTCAATTTCAGACCAGCTTGCGAATGAAATTTTAATGCCTTGTGATTCGGAAAACTCCAAGCACTATTTACAAGGAATGCT GGTGCGAAATTTAATTAGGCGGTTATGGCACTTGGACCAAGATACAATTTCACATCTGTGCTTGGTTTTAGGTGTTGGTGTACAGCCTAATGATAATTTT CACCAATCTAGAAGTCAAAGATTGAACATTAGTGGTGAAGAAAGAGATATTCTTGATGTTTGCAATTATATTGTTGCTGGCATTGTTGCATTAAAAGAAG AGGCAAATAGAAAGAAAAATGAGGAGATTCTCTCCCAAGTTACCAAGGATGGTTTCCAACTTCTCTTGAACACTATCACGAAGTGGATGCGCATCCCTTT TCAAGTGCCAACATATTTCTTTAAAATAAGGCCTTGCATTGGGTCAGAGCTCTTTGTCTTCAATGCAGATACCAGAAACTCGAATCAGTTGTCTGTCTTG CCAGGCTTCAACTTATCGCTGAATCTTTGTCTTCAATTAAGAAATCTGCCGCCAGATCTTCCATTCATAGTCACCAGGTCTTATTGTGTCCTTTATTCTA GTATGTCTTTTCAAGAGTGCAAGGAAAAAGGAGAAACCAAGGGGCAATTTCTGTGGGAAAATGGACCTTTGGACACTGACAACTTGATTCAAATGAATGA AAAATTGTTTCATCATGTAACAGAGTGTACAAAGAAGACTAGTAACAGTAAACGTGGCAGGGAAAAAGACATTGATTCTGATGAGATTATTACTGGATTT GTGTGTTTTGATCTAATCGATGCAAGGAAAGGGTTTTCAAATTGCCTTCTTGATGTTTCTCATTTTCCAGTAGGATCTTATAGAATCAAATGGCAGAGCT GTTGTATTGACAGTCAAGGTTCCTATTGGAGCCTCCTTCCATTAAATACAGGACCAGTGTTTACAGTACAGAAGCCCACTGCTGTATAA
AA sequence Show only first row Show all	>Potri.018G118800.1 pacid=42801697 polypeptide=Potri.018G118800.1.p locus=Potri.018G118800 ID=Potri.018G118800.1.v4.1 annot-version=v4.1 MERISAACAMEWSIELEKALRSKKPGQAIEGIQRIGKRIQEWSKEPKPTMAVYNMFGLVTGEDTLFANTILLRLADAFRFGDRETRVSIVKVFLLELKSR DNKKMKGRQYRGILSKDRVQNHVELLKRVKIVFDTGDVDSKALALALFGCWAPFAKDSAHIRYLILSSMISSDVLQVQASLFAAGCFCELAGDFVPVVLE MLVNMVTSSETLLTIRLAGTRVFAKMGPSYSVASRAYKTGLKLLDSLEEDLVVTMLVSLTKLASKSTLLLLEQVDLLLPFLSQEKDLLFQATALRCLHFI FMRGVVYSSVSAHGIKTFSRIVDEADLPLSMQCEALQILHKMLLYRLHNLPQDNMLELSPLLTIIENSAESSIMSKSLLAIHVQADLSMKLSRRAEMESG GNSFSPLLTRTISIIIDRVILLVKPLLVLCQAGAGVLQEVQSLLSLLLSLVREHPDLGVSVLDKVRLFIEYLVDVHEGNIVIRQESLSVPEVFDFKGENV GISLKLAYYVHKFSVSCVEIMNEAGAITTQLVDKVKLLVQSVHRCGLFHWYVLIMYSILLHSHSMWSYVVHNKKESCNPDSNLNCSLCRELVEREFFTLD CAKKLLTERDNWSAYKAGTFAACQGAWITAAFVFEQLTSKVQSGSCSCWLKSLTQFAQTESKFQFYPITQWGFSLADRSKMNEFPVMFFQDFSDELGQGA VENIRDPNYTEMLRQAHHGLCSSRKTLESIVTSDKSFCFQRWFLAIRMELLGTMADVVKVLGATPLSEDSISNSRKGEKKDEYLNSLRQITQSSFRLNRL VQEYDLISMSFIGMDSRSSKIISTLALSCLLLAFATGFAISISDQLANEILMPCDSENSKHYLQGMLVRNLIRRLWHLDQDTISHLCLVLGVGVQPNDNF HQSRSQRLNISGEERDILDVCNYIVAGIVALKEEANRKKNEEILSQVTKDGFQLLLNTITKWMRIPFQVPTYFFKIRPCIGSELFVFNADTRNSNQLSVL PGFNLSLNLCLQLRNLPPDLPFIVTRSYCVLYSSMSFQECKEKGETKGQFLWENGPLDTDNLIQMNEKLFHHVTECTKKTSNSKRGREKDIDSDEIITGF VCFDLIDARKGFSNCLLDVSHFPVGSYRIKWQSCCIDSQGSYWSLLPLNTGPVFTVQKPTAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	0	1
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	2.82	0.9077
AT5G65560			Pentatricopeptide repeat (PPR)...		Potri.006G124900 [exp]	3.00	0.9019
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.002G028300 [exp]	4.89	0.8818
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	7.21	0.8642
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	7.48	0.8899	Pt-CRP.3
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	8.36	0.8702
AT2G15900			Phox-associated domain;Phox-li...		Potri.009G108300 [exp]	8.48	0.8674
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	8.66	0.8880
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	10.58	0.8808
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	12.36	0.8774

Compare expression of checked genes

Potri.018G118800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.