Plant FIBer expression Database

Potri.018G118900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G119000
[exp]
56 / 1e-08 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G118900.1 pacid=42801936 polypeptide=Potri.018G118900.1.p locus=Potri.018G118900 ID=Potri.018G118900.1.v4.1 annot-version=v4.1
ATGGAGGTTGATGGGCAAATAAGTAGACCTAACCATGTTCCTTACGAGAAGTACCGAGAACTTTTGGAAGAAACGAGTTCCCTAAAGATGCAAGCACTTC
ATAGAGAAGAGGAAATACAGACCCTTAAGGGCATGTTAGCTCAAAAGGACAAGGAAACGGTTCGCCTTAAAGACCAGCTGCTTCTGAGAGATAAAACTAT
TAGTAAGCTAAGGGCTTTGGTTGAGTTTGCTTGGACAGAATTCGACAGTGCTAAGAAAAGAAATATAAATCCTAAAGCTTCTGCTATCGAGGAACATGAA
AAGGAGACTATACAGGAGATCAATGGGACAGCTTCAATTGTCAATGAAATTGGAATCACAAACCAAGATGGAGACACACCCACCTCGGCCCATGTTTCTT
CCATTAAAGGGGAATCTCCTTCCCTTCTCTCAACATTCAATGGCCCTCAACCCCCTCCAGCAGAAGCGAAAATCCCAAGGGAAGCTCCTAACCCATTGAC
AAAAGAAGCAAAACAAGATGACAAACCCTTTGCCTCGGCACCTATATTCTACGTTGGACCTATTCTCTCAGTTTCCAACTCTAAAGGCCATTCACTCCCT
CCACCTCCACCACGTCCACCCCCTCCACCTTCACGTATGGAAGCAAACATCGTAGGAGCAACTCCGACCCCTGTTCGTGAATTTCATATCGCACCATGTC
CACCTCCTCCACGTCCATCACCTCCACCTCCACCTATGGAAGCAAACATCGTAGGAGCAACTCCGACCCCTGTTCGTGTATTTAGAGTCGCTCCAGTCCG
ACGGATGGAAGCGAACATCACAGGAGCAACTCAAACCCCTGTTCGTATACATCGTCCGAACAACACAGAAACAAACCCAAGCTCATCGACGATTAGAGTA
GCCCATCAAGATGGAAAACCCCATGTCTCAGCTCCCATACCTTCTGTTGTTAAACCTTAA
AA sequence
>Potri.018G118900.1 pacid=42801936 polypeptide=Potri.018G118900.1.p locus=Potri.018G118900 ID=Potri.018G118900.1.v4.1 annot-version=v4.1
MEVDGQISRPNHVPYEKYRELLEETSSLKMQALHREEEIQTLKGMLAQKDKETVRLKDQLLLRDKTISKLRALVEFAWTEFDSAKKRNINPKASAIEEHE
KETIQEINGTASIVNEIGITNQDGDTPTSAHVSSIKGESPSLLSTFNGPQPPPAEAKIPREAPNPLTKEAKQDDKPFASAPIFYVGPILSVSNSKGHSLP
PPPPRPPPPPSRMEANIVGATPTPVREFHIAPCPPPPRPSPPPPPMEANIVGATPTPVRVFRVAPVRRMEANITGATQTPVRIHRPNNTETNPSSSTIRV
AHQDGKPHVSAPIPSVVKP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G118900
[exp]
0 1
AT3G22800 Leucine-rich repeat (LRR) fami... Potri.010G083000
[exp]
1.41 0.9820
Potri.019G016110
[exp]
3.46 0.9700
AT3G54220 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECRO... Potri.005G226800
[exp]
4.24 0.9639
AT2G45360 Protein of unknown function (D... Potri.014G068900
[exp]
4.89 0.9693
AT3G49690 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEM... Potri.018G058800
[exp]
5.47 0.9473
AT1G11330 S-locus lectin protein kinase ... Potri.011G037800
[exp]
7.34 0.9429
AT4G36810 GGPS1 geranylgeranyl pyrophosphate s... Potri.004G090600
[exp]
7.41 0.9658
AT5G66420 unknown protein Potri.005G120100
[exp]
8.94 0.9608
AT2G35910 RING/U-box superfamily protein... Potri.010G243400
[exp]
10.09 0.9452
AT1G56130 Leucine-rich repeat transmembr... Potri.018G026800
[exp]
10.53 0.9285

Potri.018G118900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.