Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30270 748 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 644 / 0 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT2G26980 598 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 587 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT5G35410 526 / 0 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 498 / 6e-175 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G45820 471 / 4e-164 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G18700 455 / 2e-157 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT4G30960 449 / 1e-155 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45810 447 / 4e-154 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G062800 [exp] 838 / 0 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 628 / 0 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.014G104200 [exp] 628 / 0 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.001G222600 [exp] 619 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 615 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.018G130500 [exp] 517 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 513 / 0 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.011G067500 [exp] 484 / 4e-169 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 472 / 1e-164 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042816 [exp] 786 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 780 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10030210 [exp] 622 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10002692 [exp] 617 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10022590 [exp] 545 / 0 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10019411 [exp] 523 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 486 / 4e-170 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10021488 [exp] 474 / 8e-167 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10036280 [exp] 468 / 4e-163 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10042229 [exp] 468 / 1e-162 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.018G119200.1 pacid=42800402 polypeptide=Potri.018G119200.1.p locus=Potri.018G119200 ID=Potri.018G119200.1.v4.1 annot-version=v4.1 ATGTCGTCTTCTAGAAGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAAGCGGAAGCAAGACACGTGTGGGGAGATACGAACTCGGAAGGACCCTCGGAG AAGGAAATTTTGCTAAGGTGAAATTCGCTAGGAACGTTGAGACGAAAGAGAATGTTGCCATCAAAATTCTCGATAAAGAGAATGTTCTTAAGCACAAAAT GATCGGTCAGATTAAACGGGAGATTTCAACAATGAAGTTAATCAGACACCCTAATGTCGTCCGCATGTATGAGGTGATGGCGAGCAAGACCAAAATTTAC ATTGTTTTACAATTTGTGACGGGTGGTGAACTTTTCGACAAAATTGCAAGTAAGGGGAGGTTGAAAGAGGATGAAGCGAGAAAGTATTTTCAACAACTTA TCTGTGCTGTAGATTACTGCCACAGCAGAGGTGTATACCATAGGGATCTGAAGCCTGAAAATCTGCTAATGGATGCTAATGGGATTCTTAAAGTTTCGGA TTTTGGATTGAGTGCACTACCTCAGCAAGTTAGAGAAGATGGGTTACTTCACACAACGTGTGGAACACCAAATTATGTTGCTCCGGAGGTGATCAACAAT AAGGGCTATGATGGTGCCAAGGCAGATTTATGGTCATGTGGCGTGATTCTTTTTGTCTTGATGGCTGGCTACTTACCTTTTGAAGAAGCCAACCTGATGG CACTATACAAAAAGATATTCAAGGCTGACTTCACGTGTCCTCCATGGTTCTCCTCAAGTGCAAAGAAACTAATCAAAAGGATTCTTGACCCTAATCCCTC GACACGTATCACCATTGCCGAGCTTATTGAAAATGAATGGTTTAAGAAAGGATACAAGCCACCTGCTTTTGAACAAGCTAATGTTAGCCTCGACGATGTG AACTCTATCTTCAATGAATCAGTGGATTCTCGAAACCTAGTTGTGGAGAGGCGAGAAGAAGGGTTTATAGGGCCTATGGCTCCTGTAACCATGAATGCAT TTGAACTCATCTCTACCTCTCAGGGTCTTAACCTTAGTAGTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGGGAATCAAGATTCACATCCAAACATTC TGCTAGTGAGATAATCTCAAAAATTGAAGCAGCAGCAGCGCCTTTGGGTTTTGATGTTAAGAAAAATAACTTCAAGATGAAGCTTCAAGGGGACAAGGAT GGGCGTAAGGGTCGTCTATCTGTAGCAACAGAGATCTTTGAAGTGGCCCCTTCTCTTTATATGGTCGAGGTTCGCAAGTCTGGTGGAGATACCCTGGAAT TTCACAAGTTTTACAAGAACCTCTCAACTGGACTGAAAGACATCGTATGGAAAACAATTGATGAAGAAAAGGAGGAAGAAGAGGCAGCGACAAATGGTGC TGCTCAGGTTGCTGCTCGATAA
AA sequence Show only first row Show all	>Potri.018G119200.1 pacid=42800402 polypeptide=Potri.018G119200.1.p locus=Potri.018G119200 ID=Potri.018G119200.1.v4.1 annot-version=v4.1 MSSSRSGGGGGGGGGGSGSKTRVGRYELGRTLGEGNFAKVKFARNVETKENVAIKILDKENVLKHKMIGQIKREISTMKLIRHPNVVRMYEVMASKTKIY IVLQFVTGGELFDKIASKGRLKEDEARKYFQQLICAVDYCHSRGVYHRDLKPENLLMDANGILKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINN KGYDGAKADLWSCGVILFVLMAGYLPFEEANLMALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPSTRITIAELIENEWFKKGYKPPAFEQANVSLDDV NSIFNESVDSRNLVVERREEGFIGPMAPVTMNAFELISTSQGLNLSSLFEKQMGLVKRESRFTSKHSASEIISKIEAAAAPLGFDVKKNNFKMKLQGDKD GRKGRLSVATEIFEVAPSLYMVEVRKSGGDTLEFHKFYKNLSTGLKDIVWKTIDEEKEEEEAATNGAAQVAAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G119200 [exp]	0	1
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.012G089700 [exp]	7.41	0.6805
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.010G207700 [exp]	8.94	0.6955
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	13.11	0.7383
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	14.49	0.6765
AT1G78070			Transducin/WD40 repeat-like su...		Potri.005G168600 [exp]	16.24	0.6390
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063201 [exp]	20.04	0.7013
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.005G123000 [exp]	21.93	0.5823
AT5G23610			unknown protein		Potri.004G137000 [exp]	31.46	0.6295
AT5G61140			U5 small nuclear ribonucleopro...		Potri.015G056501 [exp]	37.78	0.6456
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.006G125400 [exp]	39.59	0.6114	Pt-TKI1.2

Compare expression of checked genes

Potri.018G119200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.