Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41040 418 / 5e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G78140 286 / 8e-95 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G76090 47 / 1e-05 SMT3 sterol methyltransferase 3 (.1) AT1G20330 47 / 2e-05 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT5G13710 45 / 5e-05 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G23360 44 / 6e-05 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060400 [exp] 564 / 0 AT2G41040 461 / 5e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G095100 [exp] 306 / 6e-103 AT1G78140 442 / 2e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G165700 [exp] 286 / 4e-95 AT1G78140 407 / 1e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G245800 [exp] 51 / 4e-07 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 50 / 1e-06 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.016G056000 [exp] 48 / 5e-06 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.008G188600 [exp] 47 / 5e-06 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G263700 [exp] 47 / 2e-05 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 45 / 6e-05 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008815 [exp] 456 / 8e-162 AT2G41040 451 / 9e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013038 [exp] 53 / 1e-07 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 50 / 1e-06 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10023995 [exp] 50 / 1e-06 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10014711 [exp] 42 / 0.0003 AT3G63410 424 / 3e-150 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005625 [exp] 42 / 0.0004 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.018G120000.1 pacid=42801665 polypeptide=Potri.018G120000.1.p locus=Potri.018G120000 ID=Potri.018G120000.1.v4.1 annot-version=v4.1 ATGGCAATGGCTTCCAATGCTCTTCATCACCCTCTTCACCAATCTATATCTCTGAAATATCCTCATCTTTCTCATATTTCACGATTCTCTCCCTCTTGTC TTCGCTTCACCTCCCTCCGGTTTCCCTCTACAATTCGCGCCACTTCAGCTGTCGCTCTTGAACCGGAGTTAAGCACACAGCAGAATCAAGCAATATTTGC TTGTCCAGTATGTTATGAACCTCTAATAAGAAAAGGTCCTCCAGGTTTTAACTTGCCTGCAATATATCGGTCCAGTTTCAAGTGTAAAAAATGCACCAAA ACATACTCAAGCAAAGACAACTATCTGGATCTTACAATTACTGCTGGAATGAAGGATTACACTGAAATCAATCCAGTTAGGACCGAGCTATTCCGGAGTC CACTTGTTTCATTCTTGTATGAACGAGGTTGGCGCCAAAGCTTTAATCAAAGTGGATTTCCTGGTCCTGATGAAGAGTTTGAAATGGCTCAGGAGTACTT CAAACCTGCCAGAGGGGGTCTTCTAGTAGATGTAAGCTGTGGCAGTGGCCTGTTTTCTAGAAAATTTGCCAAATCTGGAGCATATTCAAAAGTTATTGCA CTTGATTTCTCTGAAAACATGCTTCGTCAGTGCTATGATTACATCAAGCAAGACGATACTATCTCAACAACAAATCTTGGTCTTATCAGGGCCGATGTTT CAAGACTTCCATTTGCATCGGGTTCAGTTGATGCTGTTCATGCTGGTGCTGCCATGCATTGCTGGCCATCTCCTTCCAATGCTGTTGCTGAAATTTGTCG TGTATTGCGAAGTGGTGGAGTTTTTGTCGGAACCACTTTTCTTCGATATAGTTCAACCACTCCACGGATAGAACGACCTTTCCGAGAGAGGATTTCGCGG AACTCTAACTTCTTCACGGAGGAGGAAATTGAAGACTTGTGCTCAACATGTGGTCTTACAAACTACTCAAAGAAAGTTCAGCAAACGTTCATAATGTTCT CTGCTCAGAAGCCATGA
AA sequence Show only first row Show all	>Potri.018G120000.1 pacid=42801665 polypeptide=Potri.018G120000.1.p locus=Potri.018G120000 ID=Potri.018G120000.1.v4.1 annot-version=v4.1 MAMASNALHHPLHQSISLKYPHLSHISRFSPSCLRFTSLRFPSTIRATSAVALEPELSTQQNQAIFACPVCYEPLIRKGPPGFNLPAIYRSSFKCKKCTK TYSSKDNYLDLTITAGMKDYTEINPVRTELFRSPLVSFLYERGWRQSFNQSGFPGPDEEFEMAQEYFKPARGGLLVDVSCGSGLFSRKFAKSGAYSKVIA LDFSENMLRQCYDYIKQDDTISTTNLGLIRADVSRLPFASGSVDAVHAGAAMHCWPSPSNAVAEICRVLRSGGVFVGTTFLRYSSTTPRIERPFRERISR NSNFFTEEEIEDLCSTCGLTNYSKKVQQTFIMFSAQKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41040			S-adenosyl-L-methionine-depend...		Potri.018G120000 [exp]	0	1
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027200 [exp]	2.00	0.8887
					Potri.015G084300 [exp]	18.97	0.8109
AT5G01750			Protein of unknown function (D...		Potri.016G131300 [exp]	26.15	0.8162
					Potri.004G069101 [exp]	32.84	0.7968
AT4G19380			Long-chain fatty alcohol dehyd...		Potri.004G234900 [exp]	49.47	0.8166
AT3G14470			NB-ARC domain-containing disea...		Potri.015G121800 [exp]	51.38	0.8203	FRGA-A30.27
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.008G079800 [exp]	59.16	0.8407	Pt-AS2.2
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.017G124600 [exp]	61.06	0.8173	Pt-HBGGPPS2.1
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Potri.004G031700 [exp]	90.92	0.7983	PtrcCXXS1
					Potri.004G076300 [exp]	91.91	0.8190

Compare expression of checked genes

Potri.018G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.