Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12400 597 / 0 unknown protein AT2G25270 510 / 8e-177 unknown protein AT1G80540 405 / 4e-136 unknown protein AT1G71110 379 / 1e-125 unknown protein AT5G67550 62 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060600 [exp] 823 / 0 AT2G12400 579 / 0.0 unknown protein Potri.018G023200 [exp] 589 / 0 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 575 / 0 AT2G25270 590 / 0.0 unknown protein Potri.010G115500 [exp] 387 / 1e-128 AT1G71110 646 / 0.0 unknown protein Potri.007G132601 [exp] 146 / 8e-38 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 137 / 9e-35 AT5G67550 182 / 3e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008028 [exp] 649 / 0 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 618 / 0 AT2G12400 616 / 0.0 unknown protein Lus10001945 [exp] 561 / 0 AT2G25270 650 / 0.0 unknown protein Lus10013492 [exp] 395 / 1e-131 AT1G71110 645 / 0.0 unknown protein Lus10007962 [exp] 351 / 5e-115 AT1G71110 578 / 0.0 unknown protein Lus10001929 [exp] 351 / 1e-114 AT2G25270 457 / 3e-156 unknown protein Lus10034641 [exp] 348 / 1e-113 AT1G71110 587 / 0.0 unknown protein Lus10038102 [exp] 320 / 3e-103 AT2G25270 468 / 5e-161 unknown protein Lus10014341 [exp] 317 / 4e-102 AT2G25270 352 / 7e-116 unknown protein Lus10026050 [exp] 286 / 1e-90 AT2G25270 328 / 4e-107 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G120200.1 pacid=42801707 polypeptide=Potri.018G120200.1.p locus=Potri.018G120200 ID=Potri.018G120200.1.v4.1 annot-version=v4.1 ATGTCCTGTAATAACAGATCAAACCCACCATTGTTTTTTCTCCTAAGCTTTCTTTTCTTTTTCTTTATCTTTACTTCTTCAACAGCAACTCCCAGTTCTT TAACTTCCCAGTTTGAATCTTTTTCCGTTCCTGATGTTGTGGTTGGTGGGAGAGAGAATGATGGTGTGGTGGTTTCATGGGAGATAAGGAGGCATCTTGC AGAGGAAGAGAACACAGCATCTTCTTTGATATTGGCTGCAAAGAAAACAAGAAGAAGAGACCCTTTAGAGAACTTTAAATTCTACACTTCTGGTTACAAT ATCAGCAATAAACATTATTGGGCTTCTGTTGGTTTTACTGCGGTTCCATTCTTTATCTTAGCTTTGGTTTGGTTTGTGATATTTGGACTCTGTTTGTCCT TTATCTGCCTCTGCTATTGCTGTTGTCCAACAGAGCCTTATGGCTACTCTAGAGCATGCTATGCCCTGTCTCTCATTTACCTCATCCTCTTTACCATTGC TGCAATTGCTGGATGTGTTGTTCTGTATACTGGTCAAGGGAAGTTTCACAGTATTACAACACACACATTGGAGTATGTAGTCAATCAAGCAAATGTTACT GCCAAAAACCTCAGGCATGTGTCAGATTATCTTGCTGCGGCTAAGAATACTGGTGTAGAGTCAGTTTTTCTGCCACCCAGCGTCCAAAATGACATTGATA GCATTCAAAAAAAGATCAACTCCTCTGGTACTACTCTTTCCAGCACTACACAGGATAATTCAGAAGGCATACAAAATGTTTTGGATAGCATGAGACTGGC CCTCATTATCCTTGCTGCTGTAATGCTTGCTGTGGCATTTCTTGGATTCTTATTCTCCATTTTTGGGATGCAGTGCCTTGTTTACTTTCTGGTGATCCTT GGCTGGGTTCTTGTTACGGGCACATTTATTTTGTGCGGTGTATTCCTTCTCCTTCACAACGTGGTTGCCGACACTTGTATTTCTATGGATGAGTGGGTTC AGAACCCCACTGCCAAAACAGCATTGGATGATATAATCCCATGTGTGGACAACGCAACTGCTCAAGAAACCTTGAGGCAGACCAAGGAGACAACCTATCA ACTTGTCAATGTTGTTGACTATGTAGTTAGCAATGTCTCCAACCGAAATTTTCCACCCCAAGCTGGAGATCTATATTACAATCAATCCGGCCCACTGATG CCTGTTCTTTGCAACCCATTCAATTCTGATTTTACAGATCGTAAATGTGCTGCTGGTGAAGTGGACTTGAGCAATGCTACCCAGGTGTGGAAGAATTATA TCTGTCAGGTTTCATCATCTGAGATTTGTATTACACCCGGTCGGCTTACACCCAGCTTGTACAACCAGATGGAATCTGCAGTAAACCTAAGTTATGGGTT GAATCGTTATGGTCCGTTCTTGGTTAACCTGGAAGACTGCACTTTTGTGCGAGAAACATTCACCAAGATCAGCCATTCTTATTGTCCTGATTTGCGGCGA TACTCACAATGGATATACATTGGGCTAGTAATTGTATCTGCGGCAGTAATGCTGTCACTGATCTTCTGGGTAATTTACGCAAGAGAGAGAAGGCATCGTG TATATACCAAGCAGTTCATGTCCTCATTGGAAGGCCCTGGCAAGGCATCGTGA
AA sequence Show only first row Show all	>Potri.018G120200.1 pacid=42801707 polypeptide=Potri.018G120200.1.p locus=Potri.018G120200 ID=Potri.018G120200.1.v4.1 annot-version=v4.1 MSCNNRSNPPLFFLLSFLFFFFIFTSSTATPSSLTSQFESFSVPDVVVGGRENDGVVVSWEIRRHLAEEENTASSLILAAKKTRRRDPLENFKFYTSGYN ISNKHYWASVGFTAVPFFILALVWFVIFGLCLSFICLCYCCCPTEPYGYSRACYALSLIYLILFTIAAIAGCVVLYTGQGKFHSITTHTLEYVVNQANVT AKNLRHVSDYLAAAKNTGVESVFLPPSVQNDIDSIQKKINSSGTTLSSTTQDNSEGIQNVLDSMRLALIILAAVMLAVAFLGFLFSIFGMQCLVYFLVIL GWVLVTGTFILCGVFLLLHNVVADTCISMDEWVQNPTAKTALDDIIPCVDNATAQETLRQTKETTYQLVNVVDYVVSNVSNRNFPPQAGDLYYNQSGPLM PVLCNPFNSDFTDRKCAAGEVDLSNATQVWKNYICQVSSSEICITPGRLTPSLYNQMESAVNLSYGLNRYGPFLVNLEDCTFVRETFTKISHSYCPDLRR YSQWIYIGLVIVSAAVMLSLIFWVIYARERRHRVYTKQFMSSLEGPGKAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G12400			unknown protein		Potri.018G120200 [exp]	0	1
AT1G76660			unknown protein		Potri.005G260000 [exp]	16.27	0.7869
AT2G40020			Nucleolar histone methyltransf...		Potri.010G190800 [exp]	16.55	0.7621
AT2G46170			Reticulon family protein (.1.2...		Potri.014G091200 [exp]	16.91	0.8113
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Potri.004G115700 [exp]	16.97	0.8525
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.010G157600 [exp]	17.83	0.8495
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.001G236700 [exp]	18.43	0.8147	ADF1,Pt-ADF.5
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.007G025700 [exp]	19.62	0.7862
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.001G366800 [exp]	20.39	0.8055
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032900 [exp]	22.20	0.7989
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	28.98	0.7883

Compare expression of checked genes

Potri.018G120200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.