Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07390 457 / 1e-143 AtRLP1 receptor like protein 1 (.1.2.3) AT1G58190 444 / 8e-139 AtRLP9 receptor like protein 9 (.1.2) AT1G74190 430 / 3e-134 AtRLP15 receptor like protein 15 (.1) AT1G74170 419 / 7e-130 AtRLP13 receptor like protein 13 (.1) AT1G74180 372 / 2e-112 AtRLP14 receptor like protein 14 (.1) AT2G25470 367 / 3e-111 AtRLP21 receptor like protein 21 (.1) AT3G53240 365 / 6e-111 AtRLP45 receptor like protein 45 (.1) AT5G49290 360 / 8e-109 ATRLP56 receptor like protein 56 (.1) AT1G54470 280 / 1e-79 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT2G34930 264 / 4e-74 disease resistance family protein / LRR family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G118035 [exp] 1971 / 0 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G117927 [exp] 1336 / 0 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.018G118062 [exp] 1248 / 0 AT1G74190 421 / 1e-129 receptor like protein 15 (.1) Potri.018G117981 [exp] 811 / 0 AT1G07390 307 / 4e-94 receptor like protein 1 (.1.2.3) Potri.018G117900 [exp] 739 / 0 AT1G07390 244 / 7e-72 receptor like protein 1 (.1.2.3) Potri.018G120800 [exp] 724 / 0 AT1G74190 261 / 2e-74 receptor like protein 15 (.1) Potri.001G063700 [exp] 698 / 0 AT2G25470 357 / 9e-109 receptor like protein 21 (.1) Potri.003G025100 [exp] 672 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1) Potri.018G124400 [exp] 667 / 0 AT1G07390 342 / 1e-101 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 594 / 0 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 469 / 2e-148 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 410 / 5e-127 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10016384 [exp] 273 / 2e-76 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 256 / 3e-71 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10027688 [exp] 255 / 1e-70 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10002743 [exp] 255 / 1e-70 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10039529 [exp] 251 / 2e-69 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 250 / 5e-69 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 246 / 9e-69 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G120700.2 pacid=42801509 polypeptide=Potri.018G120700.2.p locus=Potri.018G120700 ID=Potri.018G120700.2.v4.1 annot-version=v4.1 ATGGGGTTAAACAGGTTCTCTCTAGCAGTTGTGGTGATGATGATGATTAATGCCATGCTTCCATTAGAAGGGTGTTTAGAGGAAGAAAGGATTGCTCTTC TGCAAATCAAGACTTCCATGGTTGATCCAAATCATATGGGATTTGGATCCCCGCTACTCTCCTGGGGAGAGGATGCTCTCTGTTGTAATTGGGCAGGAGT TACCTGCGATTCCATTACAGGACGAGTTATCGTAATCTTTCTTTACAACGCAAGAGGTTGGTTCATAGATCCTTCAAAGGGAGTTTGGGACCGAAATGCT TCAATGGGAGATTGGTACCTAAATGCAACTATGTTTCTTCCCTTCCAAGAACTCAATATTCTTGGCTTGAGTAATAATGATATAGCTGGCTGTGTTCCGA ATGAAGGTTTCGAAAGACTATCAAGACTTACCAAATTGGAGTCTCTCTATTTAGGACTCAATAACTTCAACAATAGCATTCTATCATCCTTCAAAGGCCT TTCTTCTCTTAAACATCTATATCTTGAGAGTAACCAATTGAAAGGATCAATAGATATCAAAGAATTTGATTCATTGAGCAAGCTACAGGAGCTAGACCTG AGCCGAAATGAGATCCAAAATCTTGTGACCTCGACAGGCTCTGGAGGACCATCAAGGCTTAACAAATTGGAGACTCTTGACTTAAGCTCAAATAAAATCA ACGATAGCACCTTATCATTTCTTGAAGGGCTTTCATCTCTCAAACATCTATATCTTAATAACAACCAGTTGAAAGGATCAATAAATATGAAAGAATTTGA TTCATTGAGCATGTTGGTGGAGCTACGACTAGGAGGAAATGAAATCCAAAATTTTGCGACCTCAACAGGTTTTGAAAGATCACTGAGGCTTAACAAATTG GAGATTCTTGAATTGAGCTTCAACAAAATTAATGACAGCACCCTATCATTCCTGGAAGGGCTTTCATCTCTCAAACATCTAAATCTTGATAACAACCAAT TGAAAGGATCAATAGACATGAAAGGCCTTTGTGAGTTAAAACAACTCCAGGAGCTTGATATCAGCTACAACGATCTCAATGGTCTGCCTTCTTGTCTCAC AAATTTAAACAACCTTCAAGTTTTAGATATCTCTTTCAACAACTTTTCTGGGAATATATCCTTGAGCCGCATTGGAAGTCTCACATCCATTCGAGATCTA AAACTGTCAGACAATCACTTCCAAATACCAATCTCACTTGGCCCATTTTTTAACCTTTCAAACCTCAAGAATTTGAATGGTGACCATAATGAGATATACG AGTCAACAGAGCTGGTACACAATTTGATTCCAAGGTTCCAGTTACAGAGGCTTTCTTTGGCATGTCATGGATTCGGTGGGACATTTCCGAAATTCCTTTA CTATCAGCATGACCTTCAATTTGTTGATCTCTCACACATCAAAATAATAGGAGAATTTCCAAGCTGGTTGTTACAGAATAACACAAAACTTGAAGCGCTT TATTTGGTCAACAGTTCTCTTTCAGGATCTTTGCAATTACCAAATGATTCCCATGTGAATTTGTCACGTTTAGATATCTCAAGAAATCACATCCAAAATC AAATTCCCACTAAAATTGGGGCATATTTCCCGTGGTTAGAGTTTTTAAACCTGTCTAGAAATTATTTCAGTGGTAGCATTCCCTCTTCGATAAGCAATAT GAGCTCATTGGGAGTCTTGGATTTGTCCAATAATGGCTTGTCAGGCAACATACCCGAGCAGTTGGTTGAAGGCTGTTTATCATTACGTGGTCTCGTGCTT TCAAATAATCATTTGAAAGGCCAGTTTTTCTGGAGAAGTTTCAACTTAGCATACTTGACCGACCTGATATTAAGTGGGAATCAGTTAACAGGGATTCTTC CAAATAGCTTGTCTAATGGTTCTAGATTGGAAGCATTGGATGTCAGTCTCAACAATTTATCTGGTAAGATACCGAGATGGATAGGGTATATGTCTTCTCT TCAATATTTAGACCTTTCAGAGAACAATCTTTATGGAAGTCTACCGTCCAGCTTTTGTTCTTCAAGGACGATGACAGAAGTTTATTTATCTAAAAATAAA CTAGAAGGATCACTGATTGGTGCACTCGATGGCTGCCTGTCGCTGAATAGATTAGATCTGAGCCATAATTATTTTGGAGGTGGCATTCCCGAGTCAATTG GTTCTTTGTTAGAGTTGAGCTTTCTTCTTTTAGGTTATAATAATCTAGAAGGTAAAATCCCAAGCCAACTCTGCAAACTAGAGAAATTAAGCTTGATTGA TCTTTCTCATAATCATCTGTTCGGTCATATTCTTCCATGCCTACAACCTACCAGCAAGTGGCAGAGGGAAAGGGAAACATCTTTAAATCCTTCAGGCAAT TCTCTAGGTCGTGAGAACAGGGGACCACAGATAGTATTTCCTGTTCCCGCCGTGGAAGACCCTTCTATGAATAAATCTGTAGAGTTTACAACAAAGAGCA TATCCTATTCATTCAAGGGAATCATCCTCAAGTACATCTCCGGTATCGATCTCTCCTGCAACAATTTGACAGGAGAGATTCCTGTTGAGCTTGGAAACCT CAGCAACATCCAGGTGTTGAATCTATCCCATAATAGTTTAACAGGTCCAATACCACCTACATTTTCAAACTTAAAGGAAATTGAAAGCCTGGATCTTTCC TACAACAACTTGAACGGGGAAATTCCTCGTCAGCTTCTCGACTTATACTTCCTATCTGCTTTCAGTGTAGCCCACAATAACTTATCAGGCAAAACGCCAG AGATGGTTGCACAATTCTCAACATTCAACAAGTCTTGCTATGAGGGAAATCCGTTGCTTTGTGGACCACCACTCGCCAGAAATTGTACTAGAGCATTACC GCCATCACCGCTGCCAAGGTCTCAGACTCATAAAAAAGAAGAAAATGGCGTTATTGATATGGAGGCTTTCATTGTGACATTTTCAGTGGCATACATCATG GTCCTGTTGACAATAGGTTCAGTTCTGTACATAAACCCACGTTGGCGACGAGCATGGTTTTACTTTATTGGGGAGAGCATCAATAATTGCTATTACTTTC TTGTGGACAATCTACCTGTGCCAGCCAGGTTCAGACGATTTCAGCCTTGTGTCTAA
AA sequence Show only first row Show all	>Potri.018G120700.2 pacid=42801509 polypeptide=Potri.018G120700.2.p locus=Potri.018G120700 ID=Potri.018G120700.2.v4.1 annot-version=v4.1 MGLNRFSLAVVVMMMINAMLPLEGCLEEERIALLQIKTSMVDPNHMGFGSPLLSWGEDALCCNWAGVTCDSITGRVIVIFLYNARGWFIDPSKGVWDRNA SMGDWYLNATMFLPFQELNILGLSNNDIAGCVPNEGFERLSRLTKLESLYLGLNNFNNSILSSFKGLSSLKHLYLESNQLKGSIDIKEFDSLSKLQELDL SRNEIQNLVTSTGSGGPSRLNKLETLDLSSNKINDSTLSFLEGLSSLKHLYLNNNQLKGSINMKEFDSLSMLVELRLGGNEIQNFATSTGFERSLRLNKL EILELSFNKINDSTLSFLEGLSSLKHLNLDNNQLKGSIDMKGLCELKQLQELDISYNDLNGLPSCLTNLNNLQVLDISFNNFSGNISLSRIGSLTSIRDL KLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLIPRFQLQRLSLACHGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEAL YLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVL SNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFCSSRTMTEVYLSKNK LEGSLIGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGN SLGRENRGPQIVFPVPAVEDPSMNKSVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLS YNNLNGEIPRQLLDLYFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIM VLLTIGSVLYINPRWRRAWFYFIGESINNCYYFLVDNLPVPARFRRFQPCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G120700 [exp]	0	1
AT1G21695			hydroxyproline-rich glycoprote...		Potri.005G181200 [exp]	4.89	0.9332
AT5G05340			Peroxidase superfamily protein...		Potri.014G143200 [exp]	7.21	0.9226	Pt-PRX1.11
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G288500 [exp]	7.41	0.9203
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	7.54	0.9250
AT5G05840			Protein of unknown function (D...		Potri.008G062500 [exp]	11.48	0.8153
AT3G11930			Adenine nucleotide alpha hydro...		Potri.016G064000 [exp]	11.66	0.8870
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G118035 [exp]	12.24	0.8354
AT2G26695			Ran BP2/NZF zinc finger-like s...		Potri.018G066900 [exp]	12.40	0.9092
					Potri.001G073166 [exp]	12.96	0.9180
					Potri.010G134450 [exp]	14.49	0.8915

Compare expression of checked genes

Potri.018G120700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.