Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 261 / 2e-74 AtRLP15 receptor like protein 15 (.1) AT2G25470 248 / 5e-70 AtRLP21 receptor like protein 21 (.1) AT1G74180 243 / 9e-68 AtRLP14 receptor like protein 14 (.1) AT1G58190 238 / 2e-66 AtRLP9 receptor like protein 9 (.1.2) AT1G07390 237 / 1e-65 AtRLP1 receptor like protein 1 (.1.2.3) AT5G49290 235 / 2e-65 ATRLP56 receptor like protein 56 (.1) AT3G53240 221 / 1e-60 AtRLP45 receptor like protein 45 (.1) AT1G54470 219 / 1e-59 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT1G74170 213 / 1e-57 AtRLP13 receptor like protein 13 (.1) AT4G04220 198 / 4e-53 AtRLP46 receptor like protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G118062 [exp] 836 / 0 AT1G74190 421 / 1e-129 receptor like protein 15 (.1) Potri.018G118035 [exp] 756 / 0 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G120700 [exp] 754 / 0 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.018G117927 [exp] 729 / 0 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.006G061000 [exp] 484 / 2e-157 AT1G74190 286 / 4e-82 receptor like protein 15 (.1) Potri.006G061300 [exp] 481 / 2e-156 AT2G25470 333 / 4e-99 receptor like protein 21 (.1) Potri.001G064600 [exp] 452 / 4e-146 AT1G74180 347 / 5e-105 receptor like protein 14 (.1) Potri.018G145516 [exp] 439 / 3e-140 AT1G74190 346 / 1e-103 receptor like protein 15 (.1) Potri.018G144300 [exp] 436 / 3e-139 AT2G25470 348 / 8e-105 receptor like protein 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 365 / 4e-113 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10027856 [exp] 333 / 1e-100 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10042381 [exp] 334 / 2e-100 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027688 [exp] 196 / 7e-52 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10003389 [exp] 193 / 8e-51 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10003387 [exp] 187 / 7e-49 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10016384 [exp] 186 / 2e-48 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10006825 [exp] 182 / 4e-47 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10032335 [exp] 181 / 6e-47 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10036251 [exp] 179 / 3e-46 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G120800.2 pacid=42801327 polypeptide=Potri.018G120800.2.p locus=Potri.018G120800 ID=Potri.018G120800.2.v4.1 annot-version=v4.1 ATGGGATTCAACAGGTTCTCTCTGCCAGCAGTGGCGGTGATAATGATGATTAATGCCATGCTTCTATCACAAGGGTGTTTGGAGGAAGAACGAATTGCTC TTTTGCAAATCAAAACTTCCTTTGGTGACGACCCAAATGACATTTCATCCCCGCTATTCTCTTGGGGAAAAAATGCCCTCTGTTGCAGCTGGGAAGGAGT TACCTGCAGCAATTCCACTACAAGACGAGTCGTCGAAATCCATCTTTTCTTTGCAAGAGATTGGTACTCATCTATGGGAGATTGGTACCTAAATGCATCT ATATTTCTTCCCTTCCAAGAACTCAAAGTTCTTGACTTGGGTGGAAATGGCATAGCTGGCTGTGTTGCGAATGAAGGTTTCGAAAGATTATCAAGGCTTA ACAAATTGGAGGCTCTTTATTTGTTAAACAATAACTTCAATAATAGTATCCTATCATCCATGAAAGGGCTTTCATCTCTTAAATATCTAAATCTTGATTT CAACCGGTTGCAAGGATCAATAGACACGAAAGAATTTGATTCATTGAGGAACTTGAAGGAGCTATTGCTGGCTGAAAATGAGATCCAAGATTTTATAACC TTAACAGGCTCTGAAGGACCATCAAGACTTAACAAATTGGAGACTCTTGATTTAAGCTCAAATTACCTCTACGATAGCACCTTATCATTTTTCAAAGGGC TTTCATCTCTTAAATATCTATATCTTGATCACAACTGGCTGCATGGATCAATAGACACGAAAGGCCTTTGTGAGTTAAATCGTCTCCAGAAACTAGATAT TAGCTATAATAATATCACTGGTTCTTTGCCTTCGTGTTTCTCGAATTTGACAAACCTTCAAGCTTTAGATATCTCTTTCAACCACTTCACTGGGAATATA TCCTTGAGTCTCATTGGTAGTCTCACGTCTATTCGAGATCTAAAACTGTCAGACAATCACTTTCAAATACCAATCTCACTTGGCCCATTTTTTAACCTTT CAAACCTCAAGAATTTGAATGGTGACCGTAATGAATTATACGAGTCAACAGAGCTGGTACACAATTTAATTCCAAGGTTCCAGTTACAGGGGCTTTCTTT GGCATGTACCGGATCCAGCTGGACATTTCCGAAATTCCTGTATTATCAACATGACCTTCAATTTGTTGATCTCTCACACATCAAAATGACAGGAGAATTT CCGAGGTGGTTGTTACAAAACAACACAAAACTCGAAGAGCTTTATTTGGTCAATAATTCTCTTTCAGGATCTTTTCATTTAGCAAATCATTCCCTTGTGA GTTGGTTGTCACATTTGGATATCTCGAGAAATCGCATCCACAATGAAATTCCCACCGAAATTGGAGCATATTTCCCGAGGTTAGTGTTTTTGAACCTGTC CAGAAATGATTTCAGTGGTAGCATTCCCTCTTCGATCAGCAATATGAGCCTCTTGGAAGTCTTAGATTTGTCCAACAATGGCTTGTCAGGCAACATACCC GAGCAGTTGGTGGAAGGCTGTTTATCATTAGGTGTTCTCGTGCTTTCAAATAATTATTTGAAAGGCCAGTTTTTTTGGAAAAAATTCAACTTAACATACT TGACCGAGCTGATATTAAAAGGGAATCAGTTAACCGGGATTCTTCCGAATAGCTTGTCTAATGGTTCTCGTTTGGAAACATTGGATGTCAGTCTCAATAA TTTATCTGGCAAGATACCGAGATGGATGTTTTCTCTTCTATATTTAAACCTTTCAGAGAACAATCTTTTTGGAAGTCTACCATCCAACTTTTGTTCTTCA GGGATGATGACAAGATCACTGATTGGTGCACTTGATGGCTGCTCGTGGCTGAACAAATTAGATCTTAGCCATAACAGTTTGACTGGAGAGATTCCTTTTG AGCTTGGATACCTTAACAACATCCACGTGTTGAATCTATCTCATAACAGTTTAACAGGTCCAATACCACCTGCATTTTCAAACCTGAAGAAGATTGAAAG CTTGGATATTTCTTACAACAACTTGAACGGGAAAATTCCTTATCAGCTTGTCGACTTAAACTCCCTTTTTACTTTCAGTGTAGCCTACAATAACTTATCT GGCAAAATACCAGAGATGGTTGCACAATTTGTAACATTCAGCGAGTCTAGTTACGAGGGAAATCCGTTGCTTTGTGGACCACCGCTCACCAATAATTGCA GTGGAGAAATATTGCCATCACCGTTATCAAGGTATGGCTTCATTGATATGCAGGCTTTCTATGTGACATTTTCAGTGGCATACATCATAAACCTGTTGAC AATAAGTGCAGTTTTATACATAAACCCACACTGGAGACGAGCATGGTTTTACTTTATTAGGGAGAGCATCAATAATTGTTATTACTTTCTTGTGGACAAT TTACATGTGCCAGCCAGGTTTAGACGATTTCAGCCTTGTGTCTAA
AA sequence Show only first row Show all	>Potri.018G120800.2 pacid=42801327 polypeptide=Potri.018G120800.2.p locus=Potri.018G120800 ID=Potri.018G120800.2.v4.1 annot-version=v4.1 MGFNRFSLPAVAVIMMINAMLLSQGCLEEERIALLQIKTSFGDDPNDISSPLFSWGKNALCCSWEGVTCSNSTTRRVVEIHLFFARDWYSSMGDWYLNAS IFLPFQELKVLDLGGNGIAGCVANEGFERLSRLNKLEALYLLNNNFNNSILSSMKGLSSLKYLNLDFNRLQGSIDTKEFDSLRNLKELLLAENEIQDFIT LTGSEGPSRLNKLETLDLSSNYLYDSTLSFFKGLSSLKYLYLDHNWLHGSIDTKGLCELNRLQKLDISYNNITGSLPSCFSNLTNLQALDISFNHFTGNI SLSLIGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDRNELYESTELVHNLIPRFQLQGLSLACTGSSWTFPKFLYYQHDLQFVDLSHIKMTGEF PRWLLQNNTKLEELYLVNNSLSGSFHLANHSLVSWLSHLDISRNRIHNEIPTEIGAYFPRLVFLNLSRNDFSGSIPSSISNMSLLEVLDLSNNGLSGNIP EQLVEGCLSLGVLVLSNNYLKGQFFWKKFNLTYLTELILKGNQLTGILPNSLSNGSRLETLDVSLNNLSGKIPRWMFSLLYLNLSENNLFGSLPSNFCSS GMMTRSLIGALDGCSWLNKLDLSHNSLTGEIPFELGYLNNIHVLNLSHNSLTGPIPPAFSNLKKIESLDISYNNLNGKIPYQLVDLNSLFTFSVAYNNLS GKIPEMVAQFVTFSESSYEGNPLLCGPPLTNNCSGEILPSPLSRYGFIDMQAFYVTFSVAYIINLLTISAVLYINPHWRRAWFYFIRESINNCYYFLVDN LHVPARFRRFQPCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G120800 [exp]	0	1
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G118062 [exp]	1.00	0.9346
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.018G152200 [exp]	3.00	0.9054
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082300 [exp]	3.46	0.9147
AT5G38260			Protein kinase superfamily pro...		Potri.017G007900 [exp]	6.48	0.8590
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G005100 [exp]	7.41	0.8289
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.011G165800 [exp]	10.67	0.8606
AT4G24290			MAC/Perforin domain-containing...		Potri.001G305600 [exp]	14.14	0.7702
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.019G007227 [exp]	15.36	0.8645
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	16.27	0.8611
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G020000 [exp]	17.14	0.7585

Compare expression of checked genes

Potri.018G120800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.