Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49290 97 / 3e-21 ATRLP56 receptor like protein 56 (.1) AT1G58190 97 / 4e-21 AtRLP9 receptor like protein 9 (.1.2) AT1G54470 89 / 6e-19 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT1G74190 88 / 3e-18 AtRLP15 receptor like protein 15 (.1) AT1G74180 86 / 1e-17 AtRLP14 receptor like protein 14 (.1) AT2G25470 84 / 8e-17 AtRLP21 receptor like protein 21 (.1) AT3G53240 71 / 1e-12 AtRLP45 receptor like protein 45 (.1) AT5G27060 69 / 3e-12 AtRLP53 receptor like protein 53 (.1) AT3G23120 68 / 5e-12 AtRLP38 receptor like protein 38 (.1) AT1G07390 68 / 9e-12 AtRLP1 receptor like protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G118062 [exp] 423 / 3e-137 AT1G74190 421 / 1e-129 receptor like protein 15 (.1) Potri.018G117927 [exp] 393 / 1e-126 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.018G120800 [exp] 345 / 5e-111 AT1G74190 261 / 2e-74 receptor like protein 15 (.1) Potri.018G120700 [exp] 309 / 2e-95 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.018G118035 [exp] 301 / 3e-92 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G117954 [exp] 263 / 5e-87 AT5G49290 66 / 1e-12 receptor like protein 56 (.1) Potri.006G061300 [exp] 197 / 4e-55 AT2G25470 333 / 4e-99 receptor like protein 21 (.1) Potri.001G063909 [exp] 168 / 6e-45 AT1G74190 333 / 3e-99 receptor like protein 15 (.1) Potri.001G065327 [exp] 167 / 2e-44 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 95 / 2e-20 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10027856 [exp] 95 / 2e-20 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10042381 [exp] 87 / 5e-18 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10030633 [exp] 62 / 3e-10 AT3G47570 169 / 6e-47 Leucine-rich repeat protein kinase family protein (.1) Lus10012949 [exp] 61 / 2e-09 AT5G25930 910 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10011386 [exp] 60 / 3e-09 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 59 / 4e-09 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019145 [exp] 59 / 6e-09 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10007206 [exp] 59 / 6e-09 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10002743 [exp] 58 / 1e-08 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G120827.1 pacid=42800983 polypeptide=Potri.018G120827.1.p locus=Potri.018G120827 ID=Potri.018G120827.1.v4.1 annot-version=v4.1 ATGGGATTAAACAGGTTCTCTCTGCCAGCAGTGGCGGTGATGGTGATGATTAATGCTATGCTTCTATCCCAAGGGTGTTTGGAGGAAGAACGAATTGCTC TATTGCAAATCAAAACTTCCTTTGGTGACCACCCAAATGACATTGCATCCCCGCTATTCTCTTGGGGAAAAGATGCCCTCTGTTGCAGTTGGAAAAGAGT TACCTGCAGCAATTCCACTACAAGACGAGTCATCGAAATCAATCTTTACTTCACAAGAGATAGGTCAATGGAAGATTTGTACCTAAACGCATCTATATTT CTTCCCTTCCAAGAACTCAATGTTCTTGACTTGAGTGGAAATGGCATAGCTGGCTGTGTTGCGAATGAAGGTTTCGAAAGACTATCAAGACTTGCCAAAT TGGAGGTTCTTCTTTTGTCTGACAATTACTTCAATAATAGCATCCTATCATCCATGAAAGGGCTTTCATCTCTCAAATATCTAAATCTTGATTTCAACCA GTTGCAAGGATCAATAGACACGAAAGAATTTGATTCATTGAGCAACTTGGAGGAGCTATCGCTGGCTAAAAATGAGATCCAAGATTTTGTAACCTTAACA GGCTCTGAAGGACCATCAAGACTTAACAAATTGGAGGTTCTTGATTTAAGCTCAAATTACCTCAACAATAGCATCCTATCATCCCTCAAAGGGCTTTCAT CTCTCAAACATCTAAATCTTGGTGGCAACCAAGTGCAAGGATCAATAAACATGAAAGAATTTGATTCATTGAGCAACTTGGAGGTGCTATGGTTGGCTGG AAATAAGATCCAAAATGTTGTAGCCTTAACAGGCTCTGAAGGACCATCAAGGCTTAACAAATTGCAGAGTCTTGATTTAAGCTTCAATAACTTCAACAAT AGCATCCTATCATCCCTCGAAGGGCTTAACAAATTGGAGAGTCTTGATTTAAGATACAATCACTTCAACAATAGCATCCTATCATCCCTCAAAGGGCTTT CATCTCTCAAACATCTAAATCTTAGTGACAACCAACTGCAAGGATCAATAAACATGAAAGAATTTGATTCATTGAGCAACTTGGAGGAGCTATCACTGTC AGGAAATAATATCCAAAATTTTGTAGCCTTAACAGGTTATGAAGGACCATCGAGGCTTAACAAGTTGAAGAGTCTTGATTTAGGCTATAATAGAATCAAC GATAGCACCTTATCATTCTTCAAAGGATTTTCATCTCTCAGACATCTATATCTTTATAGTCAGATGAACGTATCAATAGACACGAAAGGTTACATGCCTA CATATATTCCTTATATATATATTACTAGTTTTTTTTTTCAAGTGATAAGATGA
AA sequence Show only first row Show all	>Potri.018G120827.1 pacid=42800983 polypeptide=Potri.018G120827.1.p locus=Potri.018G120827 ID=Potri.018G120827.1.v4.1 annot-version=v4.1 MGLNRFSLPAVAVMVMINAMLLSQGCLEEERIALLQIKTSFGDHPNDIASPLFSWGKDALCCSWKRVTCSNSTTRRVIEINLYFTRDRSMEDLYLNASIF LPFQELNVLDLSGNGIAGCVANEGFERLSRLAKLEVLLLSDNYFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTKEFDSLSNLEELSLAKNEIQDFVTLT GSEGPSRLNKLEVLDLSSNYLNNSILSSLKGLSSLKHLNLGGNQVQGSINMKEFDSLSNLEVLWLAGNKIQNVVALTGSEGPSRLNKLQSLDLSFNNFNN SILSSLEGLNKLESLDLRYNHFNNSILSSLKGLSSLKHLNLSDNQLQGSINMKEFDSLSNLEELSLSGNNIQNFVALTGYEGPSRLNKLKSLDLGYNRIN DSTLSFFKGFSSLRHLYLYSQMNVSIDTKGYMPTYIPYIYITSFFFQVIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.018G120827 [exp]	0	1
AT1G24440			RING/U-box superfamily protein...		Potri.015G089800 [exp]	2.00	0.8991
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013400 [exp]	4.69	0.8772
					Potri.012G014800 [exp]	9.79	0.8539
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.015G086200 [exp]	13.96	0.7847
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.014G146000 [exp]	15.29	0.8451
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147400 [exp]	16.97	0.8562
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Potri.018G117954 [exp]	18.70	0.7358
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.011G057100 [exp]	18.70	0.8668
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076100 [exp]	18.97	0.8697
					Potri.008G204750 [exp]	22.44	0.8255

Compare expression of checked genes

Potri.018G120827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.