Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34940 734 / 0 ATGUS3 glucuronidase 3 (.1.2.3) AT5G61250 513 / 3e-178 ATGUS1 glucuronidase 1 (.1.2) AT5G07830 489 / 1e-168 ATGUS2 glucuronidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G062200 [exp] 955 / 0 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 699 / 0 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.010G160800 [exp] 525 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 488 / 2e-168 AT5G07830 731 / 0.0 glucuronidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038109 [exp] 763 / 0 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10008823 [exp] 763 / 0 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10008038 [exp] 746 / 0 AT5G34940 671 / 0.0 glucuronidase 3 (.1.2.3) Lus10001923 [exp] 551 / 0 AT5G34940 535 / 0.0 glucuronidase 3 (.1.2.3) Lus10015737 [exp] 502 / 6e-174 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 493 / 3e-170 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 490 / 3e-169 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 487 / 5e-168 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 485 / 2e-167 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 477 / 4e-164 AT5G07830 524 / 0.0 glucuronidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF03662 [poplar] [flax] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G121500.1 pacid=42802009 polypeptide=Potri.018G121500.1.p locus=Potri.018G121500 ID=Potri.018G121500.1.v4.1 annot-version=v4.1 ATGATTTATTTGCAGAACTGGCAAATGGGGCTGTGCTTGCTGGTCTGTATCATTAGCTGTTGCTTCATTTCTGTGAGTTCACAAAGTGCTGTTGCTGGAA ATGATAATAACAGTGTTGTTGAAGGAACTGTTTTCATAGATGGAAAATCTTCCATTGGAAAGATTGATGAAAATTCCATTTGTGCCACCTTAGATTGGTG GCCACCTGAGAAATGTGATTATGGGACATGCAGCTGGGATCATGCTTCTCTCATTAATCTGGATCTTAACAACAGCATCTTGTTAAATGCCATAAAGGCT TTTTCGCCATTGAAAATCAGAATAGGGGGCACTTTGCAAGATAAGGTCATTTATGACACCGAAGATAATAAGCAACCTTGTGTCCAATTTGTCAAAAACA CCAGGGAGATGTTTGGTTTCACTCAGGGTTGCTTACCAATGTATAGATGGGATGAACTTAATGCCTTTTTCAAGAAATCTGGGGCTGAAATTATATTTGG GTTAAATGCTCTCACTGGCCGATCCATGAAATCTGATGGTTCTGCAGTAGGAGCTTGGAACTACTCTAATGCAGAATCATTTATAAGCTATACTATCAAG AAGAACTACTCTATTTATGGCTGGGAGCTCGGAAATGAATTATGTGGGAGTGGTGTTGGAACAAGAGTTGCAGCAGCTCAGTATGCTTCTGATACAATTT CCCTGTATAACATAGTGAAAAAGATTTACAGCAGCATTGAACCGAAACCGCTAGTTATAGCACCTGGAGGATTCTATGATGCAAATTGGTTCAAAGAGTT TGTAGATAAAACAGGCAATTCTGTAGATGCTATCACCCACCACATATACAATCTTGGTCCAGGAGTTGATACACATCTCATTGAAAAGATCCTTAACCCA TCCTATCTTGATGGTGAGGCTAGGACCTTCAATAGCCTCCAAAGCACTCTCAAGAGTTCTGCAACTTCAGCAGTTGCATGGGTTGGTGAATCAGGAGGGG CTTACAACAGTGGCCGTAACCTTGTTACCAATGCATTCGTGTTTAGTTTCTGGTATTTGGATCAGCTTGGGATGGCATCATCTTATGATACAAAAACGTA CTGCAGACAGTCATTGATTGGTGGCAATTATGGTTTACTCAACACTACTACTTTTGTTCCAAATCCGGATTACTACAGTGCTCTTCTTTGGCACCGCTTA ATGGGAAGAAATGTTCTATCAACCAGCTTTTCTGGAACGAAAAAAATTCGTGCATATACTCATTGCGCAAAACAATCTAAGGGGATCACATTACTACTAA TCAACCTTGACAGTAGCACGACTGTTGATGTCAATGTAAAATTCAACAGCACTTTGGGATTGCACCGTAAACACAAGACTCACAGGTCTCATGAAACAAA GGTCATTCGACTGCTTGAAGGATCCACAAGTGAGATAACAAGAGAAGAATACCATCTAACAGCAAAAGATGGAGATTTACACAGCCGAATAATGCTACTC AATGGGAACATTTTAACAGTAAATTCATCCGGGGACATACCTTCCTTCGAGCCACTACTTGTAAATTCATCAAAGCCGATAATGGTTGCTCCTTTCTCTA TTGTATTCGTTCAAATGTCATATGTTCTCCCTGCTTGCAGTTAG
AA sequence Show only first row Show all	>Potri.018G121500.1 pacid=42802009 polypeptide=Potri.018G121500.1.p locus=Potri.018G121500 ID=Potri.018G121500.1.v4.1 annot-version=v4.1 MIYLQNWQMGLCLLVCIISCCFISVSSQSAVAGNDNNSVVEGTVFIDGKSSIGKIDENSICATLDWWPPEKCDYGTCSWDHASLINLDLNNSILLNAIKA FSPLKIRIGGTLQDKVIYDTEDNKQPCVQFVKNTREMFGFTQGCLPMYRWDELNAFFKKSGAEIIFGLNALTGRSMKSDGSAVGAWNYSNAESFISYTIK KNYSIYGWELGNELCGSGVGTRVAAAQYASDTISLYNIVKKIYSSIEPKPLVIAPGGFYDANWFKEFVDKTGNSVDAITHHIYNLGPGVDTHLIEKILNP SYLDGEARTFNSLQSTLKSSATSAVAWVGESGGAYNSGRNLVTNAFVFSFWYLDQLGMASSYDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRL MGRNVLSTSFSGTKKIRAYTHCAKQSKGITLLLINLDSSTTVDVNVKFNSTLGLHRKHKTHRSHETKVIRLLEGSTSEITREEYHLTAKDGDLHSRIMLL NGNILTVNSSGDIPSFEPLLVNSSKPIMVAPFSIVFVQMSYVLPACS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G121500 [exp]	0	1
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.016G031600 [exp]	3.74	0.8696
AT1G13750			Purple acid phosphatases super...		Potri.010G158400 [exp]	6.48	0.8122
AT3G63240			DNAse I-like superfamily prote...		Potri.002G050000 [exp]	6.63	0.8443
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.003G088900 [exp]	7.34	0.8359
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.013G008600 [exp]	7.74	0.8332
AT5G45470			Protein of unknown function (D...		Potri.015G107400 [exp]	8.66	0.8172
AT3G48210			unknown protein		Potri.012G088000 [exp]	8.66	0.8270
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Potri.017G007500 [exp]	9.43	0.7923
AT2G20770		GCL2	GCR2-like 2 (.1)		Potri.013G134700 [exp]	19.18	0.8365
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Potri.018G066300 [exp]	19.82	0.7776	SMH903

Compare expression of checked genes

Potri.018G121500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.