Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MGDC.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20410 668 / 0 ATMGD2, MGD2 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) AT2G11810 648 / 0 ATMGD3, MGDC MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, monogalactosyldiacylglycerol synthase type C (.1.2) AT4G31780 489 / 4e-170 UGT81A1, EMB2797, MGDA, MGD1 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063300 [exp] 748 / 0 AT5G20410 691 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Potri.018G016600 [exp] 482 / 3e-167 AT4G31780 723 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Potri.006G266500 [exp] 481 / 1e-166 AT4G31780 743 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008048 [exp] 708 / 0 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Lus10016359 [exp] 704 / 0 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Lus10026895 [exp] 484 / 7e-168 AT4G31780 758 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Lus10003418 [exp] 482 / 3e-167 AT4G31780 764 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF04101 [poplar] [flax] Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain CL0113 [poplar] [flax] GT-B PF06925 [poplar] [flax] MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase
Representative CDS sequence Show only first row Show all	>Potri.018G123000.1 pacid=42801953 polypeptide=Potri.018G123000.1.p locus=Potri.018G123000 ID=Potri.018G123000.1.v4.1 annot-version=v4.1 ATGACGACCGTGGCTTCTCCAAGGAAATCATCATTTACAGAGGTTTTACAAAGAGTTTATGGGAATCTTGGGTCCTTAAGTAGTAGTAGCAATAGCAGCA ACGGCTTTTATAGTAATAATCTACAAAAGCACAAGGGTTGTGTTCATGAGAGTGAAGATGATTTTGAAGATGAAGATGGGACCATGGAGCTTGAGCTTGT TCAGATTGGTGCTGAAAGAACCAAGAATGTTTTGATCCTTATGAGCGATACAGGTGGTGGTCATCGTGCTTCTGCTGAAGCCATTCGTGAAGCTTTCAAG CTTGAATATGGTGATGAATACAACATAATCGTGAAGGATGTTTGGAAAGAGTACACAGGCTGGCCATTGAATGATATGGAGGGGCAATACAAATTCATGG TGAAACATGTACAGCTATGGAAGGTGGCATTTCACAGTACTTCTCCAAGATGGATACACTCTTGCTATCTTGCCGCAATCGCTGCCTACTATGCCAAGGA GGTTGAGGCTGGTCTAATGGAGTACAAGCCAGATATAATTATCAGTGTTCATCCCTTGATGCAGCATATTCCCCTGTGGGTTCTGAAATGGCAAGGCTTG CAAAAGCAAGTTATTTTTGCTACAGTCATCACCGACCTCAATAGCTGCCATCCTACATGGTTTCATCCTGGGGTGAATAGATGCTACTGCCCATCAAAGG AGGTAGCTAAGAGGGCTGCACTAGATGGGCTGGAAGATTCTCAAATCCGTGTTTTTGGCTTGCCCATCCGACCGTCTTTTGCTCTTGCAGTTCTTTCGAA GGATGAGTTAAGAGAAGAGCTTGAACTGGACCCTGATTTGCCTGCAGTTTTACTGATGGGAGGTGGTGAAGGTATGGGGCCTGTTAAGAAAACAGCTTTG GCTCTTGGAGAATCACTGTTTGATAAAGAACTTGGAAAACCACTTGGGCAATTAATCATCATTTGTGGGCGTAATAAGGCTCTCAAATCAACCTTGGAGT CTCATGAATGGACAATCCCAGTTAAGGTTAGAGGATTTGAGACACAGATGGAGAAATGGATGGGAGCTTGTGACTGCATAATTACGAAAGCTGGACCTGG CACAATCGCAGAAGCATTGATTAGAGGGCTTCCTATTATTCTCAATGACTACATTCCTGGACAAGAAAAGGGCAATGTGCCTTACGTTGTAGACAATGGG GCTGGTGTCTTCACCAGAAGTCCTAAAGAAACAGCAAGAATCGTTAAAGAATGGTTTAGCACGAAAACAGATGAACGTAAAAGGATGTCAGAAAATGCAC TCAAACTAGCCCAACCGGAGGCCGTATTTGACATCGTGAAGGACATTCACGAACTTGCGCAAGCACGCGGTCCTCTTGCGAATATCCCTTACATATTGAC ATCATCATTCGCAAGCATAATCTGA
AA sequence Show only first row Show all	>Potri.018G123000.1 pacid=42801953 polypeptide=Potri.018G123000.1.p locus=Potri.018G123000 ID=Potri.018G123000.1.v4.1 annot-version=v4.1 MTTVASPRKSSFTEVLQRVYGNLGSLSSSSNSSNGFYSNNLQKHKGCVHESEDDFEDEDGTMELELVQIGAERTKNVLILMSDTGGGHRASAEAIREAFK LEYGDEYNIIVKDVWKEYTGWPLNDMEGQYKFMVKHVQLWKVAFHSTSPRWIHSCYLAAIAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGL QKQVIFATVITDLNSCHPTWFHPGVNRCYCPSKEVAKRAALDGLEDSQIRVFGLPIRPSFALAVLSKDELREELELDPDLPAVLLMGGGEGMGPVKKTAL ALGESLFDKELGKPLGQLIIICGRNKALKSTLESHEWTIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVDNG AGVFTRSPKETARIVKEWFSTKTDERKRMSENALKLAQPEAVFDIVKDIHELAQARGPLANIPYILTSSFASII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Potri.018G123000 [exp]	0	1	MGDC.2
AT3G09980			Family of unknown function (DU...		Potri.006G115400 [exp]	1.73	0.7776
AT2G36020		HVA22J	HVA22-like protein J (.1)		Potri.016G072600 [exp]	4.35	0.7988
AT1G34750			Protein phosphatase 2C family ...		Potri.002G097200 [exp]	12.16	0.7853
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	15.36	0.7654
AT4G10265			Wound-responsive family protei...		Potri.013G148300 [exp]	22.04	0.7635
AT1G72510			Protein of unknown function (D...		Potri.001G166900 [exp]	33.36	0.7621
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Potri.010G077700 [exp]	41.02	0.7437	Pt-MPI7.1
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.015G066200 [exp]	42.04	0.7311	Pt-CDPK1.4
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.008G203500 [exp]	43.86	0.7397
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.014G041300 [exp]	47.95	0.7205

Compare expression of checked genes

Potri.018G123000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.