Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60430 333 / 1e-118 ARPC3 actin-related protein C3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063400 [exp] 349 / 3e-125 AT1G60430 322 / 2e-114 actin-related protein C3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006335 [exp] 330 / 2e-117 AT1G60430 332 / 3e-118 actin-related protein C3 (.1.2) Lus10018909 [exp] 328 / 7e-117 AT1G60430 330 / 9e-118 actin-related protein C3 (.1.2) Lus10029603 [exp] 328 / 5e-115 AT1G60430 329 / 1e-115 actin-related protein C3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04062 [poplar] [flax] P21-Arc ARP2/3 complex ARPC3 (21 kDa) subunit
Representative CDS sequence Show only first row Show all	>Potri.018G123100.1 pacid=42800812 polypeptide=Potri.018G123100.1.p locus=Potri.018G123100 ID=Potri.018G123100.1.v4.1 annot-version=v4.1 ATGGTTCATCACTCTAGTTTTGTGGATGAGGAGGGAGTAAGAAAAGCTTGCGGCTGCCCTTTGCTTCCATTAAAAAGTCATATAAAGGGTCCTGCTCCAG TTTCGGATCAAGATAGAACTGATATAGTTGATGAGGCAATCACATTTTTTCGCGCCAATGTTTTCTTTAGAAATTTTGATATTCAGAGCCCAGCTGATAA GCTCCTTATTTACTTAACATTCTACATCAATGTGGCTTTGAAGAGGCTTGAGGGTTGCAGAACTTTGGCTGAAGGAACGAAAGCAATTATTAACTTGGGT TTGGAGAAGGTTCCTGTTCCTGGAGAGTCTGGCTTTCCTTTCCCAGGCCTTTTTGCTGATCCTCAATCTCAGAAGGAAGCAGAGCTATTCAGAAATTATC TTAAACAGATAAGGGAAGAAACTAGCGGGAGACTATTGAGTGTTGCATACAGACCCAATGGGACTCCAAACAAATGGTGGTTGGCCTTTGCCAAGAGGAA ATTCATGAATGTCGTCGCTCTTTGA
AA sequence Show only first row Show all	>Potri.018G123100.1 pacid=42800812 polypeptide=Potri.018G123100.1.p locus=Potri.018G123100 ID=Potri.018G123100.1.v4.1 annot-version=v4.1 MVHHSSFVDEEGVRKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFDIQSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLG LEKVPVPGESGFPFPGLFADPQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNVVAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Potri.018G123100 [exp]	0	1
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.001G304800 [exp]	3.31	0.8835	CAM2
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.010G198800 [exp]	4.47	0.8555	EMB101.1
AT5G24760			GroES-like zinc-binding dehydr...		Potri.004G067000 [exp]	5.19	0.8735
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.016G006200 [exp]	6.00	0.8636
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.003G122900 [exp]	8.48	0.8428
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	8.60	0.8816
AT5G47530			Auxin-responsive family protei...		Potri.016G010900 [exp]	11.74	0.8022
AT5G51400			PLAC8 family protein (.1)		Potri.001G124500 [exp]	15.49	0.8125
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.004G013400 [exp]	16.52	0.8062	PDT1
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Potri.014G117300 [exp]	19.02	0.7136	GA2.5

Compare expression of checked genes

Potri.018G123100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.