Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10790 466 / 8e-159 UBP22 ubiquitin-specific protease 22 (.1) AT5G57990 146 / 1e-36 UBP23 ubiquitin-specific protease 23 (.1) AT4G24560 143 / 1e-35 UBP16 ubiquitin-specific protease 16 (.1) AT4G17895 134 / 6e-33 UBP20 ubiquitin-specific protease 20 (.1) AT3G14400 127 / 2e-30 UBP25 ubiquitin-specific protease 25 (.1) AT4G39910 121 / 6e-30 ATUBP3 ubiquitin-specific protease 3 (.1) AT2G22310 120 / 1e-29 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT2G24640 121 / 3e-29 UBP19 ubiquitin-specific protease 19 (.1.2) AT5G65450 120 / 2e-28 UBP17 ubiquitin-specific protease 17 (.1) AT4G31670 119 / 3e-28 UBP18 ubiquitin-specific protease 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266100 [exp] 578 / 0 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G017000 [exp] 569 / 0 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G107500 [exp] 144 / 6e-36 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 141 / 4e-35 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.001G142000 [exp] 135 / 6e-33 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1) Potri.003G092400 [exp] 134 / 9e-33 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G394600 [exp] 132 / 1e-32 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.002G104800 [exp] 132 / 3e-32 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.005G156900 [exp] 129 / 6e-31 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009273 [exp] 142 / 2e-35 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10035825 [exp] 135 / 6e-33 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 131 / 9e-32 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10026918 [exp] 127 / 1e-30 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 127 / 1e-30 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10043127 [exp] 125 / 5e-30 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10013726 [exp] 120 / 2e-28 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10041705 [exp] 116 / 3e-28 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 116 / 3e-28 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10032623 [exp] 120 / 4e-28 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00443 [poplar] [flax] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G123200.1 pacid=42801930 polypeptide=Potri.018G123200.1.p locus=Potri.018G123200 ID=Potri.018G123200.1.v4.1 annot-version=v4.1 ATGTCATCAAAAATCAATCACCACCACCATATCAACGGCCACGATTCTATCCCTCCACCCTGTCCCCACCTCGCCGATTTCCGTTCCCGTAACGGCACTA AACCCTTCCACCTCCTCCAAAACTGCCTCCGCATCAAACCACCTCACGGCCGCGCCTCGATCCGTCGTGACCCCTCAGAGATCCCTCGCTGTGGCGCGTG CGCCGTGTCCTCTGTCCCCCGCATCTACGCTTGCGTAACCTGCGCTACCATCTCCTGCCACGCGCCTCCGGAACCCTCCCATGCGGCGGCGCACGCCGCC TCCATGGCTCCTGGTCACGAGATCTCCGTCGATGTCGACCGTGCAGAGCTTTTCTGCTGCGCGTGTCGCGATTATGTTTACGATCGCGATTTCGACGCGG CGGTGGTGCTGTCATCTAAGGCCAACAATATTCATAGCAATGTTAATAGCGATAATCTCCGCAAAAAACGGAGGATTGTTGAGTACCGGCCGTGGCTTCC GGATATCCAGGAGCGCGTGCTGGTGAATAACAATTCGAGTGTGTTGAATTTTGTAGAGGATCGGCCGTGGGGGTTGAGAGGGCTGAATAATTTAGGGAAC ACTTGTTTTATGAATTCAGTGTTGCAGGCATTGCTGCATACTCCGCCTTTACGGAATTATTTTTTGAGTGATAGGCATAATAGATATTATTGTCAACAAA AGAAGAGTGGTAATGAGAATGGGGTTGTTGGTGGAAAGAGAAGTAATGGTGGTGATGGTAATGGGGGTAAGGGTTTGAGGCTGTGTCTGGCTTGTGATAT GGATGCTATGTTTTCTGCTGTTTTTTCGGGGAATCCCGTGCCTTATAGTCCCGCCAAGTTTTTGTACAGTTGGTGGCAACATGCAGCAAACTTAGCAAGT TACGAACAGCAGGATGCGCATGAGTTTTTCATTTCCATGCTTGATGGGATCCATGAAAAGGTGGAGAAGGATCGACACAAGACCCATGGTCTAGGCCATG GAGATTGTTGCATTGCCCACAGAGTATTTTCTGGAATCTTGCGATCTGATGTCATGTGCACAGCTTGTGGTTTCACATCTACTAAGTATGACCCATGCGT GGACATTTCTCTGGATTTGGAACCTTACCTGGGGAGTTCTGCAAAGTCTATGTCTTTGAAGACTCCTTCTTGCAATGGTGAGGCGGATTGCACGAATTCA AGCCAAAATGGTGGGATATCAACACTAATTGGGTGCTTGGACCGATTTACTAGACCTGAGAGATTGGGCTCTGACCAGAAATTCTTCTGCCAACAGTGTC AGGTGAGGCAGGAGTCTCTAAAACAGATGTCTATAAGAAAGCTTCCACTCGTTTCATGCTTTCATATCAAAAGATTTGAACATTCTTCCATACGTAAAAT GTCAAGGAAGGTTGACCGTTATCTGCAATTTCCTTTTTCATTGGACATGGCACCTTATCTTTCTTCTTCTATCTTGAGGAGTCGATTTGGAAATAGGATC TTCCCATTTGACGGAGATGAAGCAGATGCTTCAAAAGAAATGTCATCAGAGTTTGAGCTGTTTGCTGTGGTCACTCACACAGGTAAACTTGATTCTGGTC ACTATGTGACTTATTTGCGCTTAAGTAATCAGTGGTACAAGTGTGATGATTCTTGGATCACTCAAGTCAATGAGAACATTGTGAGGGCTGCGCAAGGGTA CATGATGTTTTATGTACAGAAGATGCTCTATTACAAAGCTGGCGAGAAACAAGTTGCCCAGTGA
AA sequence Show only first row Show all	>Potri.018G123200.1 pacid=42801930 polypeptide=Potri.018G123200.1.p locus=Potri.018G123200 ID=Potri.018G123200.1.v4.1 annot-version=v4.1 MSSKINHHHHINGHDSIPPPCPHLADFRSRNGTKPFHLLQNCLRIKPPHGRASIRRDPSEIPRCGACAVSSVPRIYACVTCATISCHAPPEPSHAAAHAA SMAPGHEISVDVDRAELFCCACRDYVYDRDFDAAVVLSSKANNIHSNVNSDNLRKKRRIVEYRPWLPDIQERVLVNNNSSVLNFVEDRPWGLRGLNNLGN TCFMNSVLQALLHTPPLRNYFLSDRHNRYYCQQKKSGNENGVVGGKRSNGGDGNGGKGLRLCLACDMDAMFSAVFSGNPVPYSPAKFLYSWWQHAANLAS YEQQDAHEFFISMLDGIHEKVEKDRHKTHGLGHGDCCIAHRVFSGILRSDVMCTACGFTSTKYDPCVDISLDLEPYLGSSAKSMSLKTPSCNGEADCTNS SQNGGISTLIGCLDRFTRPERLGSDQKFFCQQCQVRQESLKQMSIRKLPLVSCFHIKRFEHSSIRKMSRKVDRYLQFPFSLDMAPYLSSSILRSRFGNRI FPFDGDEADASKEMSSEFELFAVVTHTGKLDSGHYVTYLRLSNQWYKCDDSWITQVNENIVRAAQGYMMFYVQKMLYYKAGEKQVAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G123200 [exp]	0	1
AT3G16270			ENTH/VHS family protein (.1)		Potri.001G187000 [exp]	3.16	0.6990
AT2G37520			Acyl-CoA N-acyltransferase wit...		Potri.006G083600 [exp]	6.78	0.7058
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G259216 [exp]	7.48	0.6428
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.009G026200 [exp]	14.28	0.6544
AT5G55060			unknown protein		Potri.011G089300 [exp]	14.42	0.6542
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.012G110700 [exp]	25.41	0.5792
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.011G084400 [exp]	25.92	0.6477
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.005G137600 [exp]	28.98	0.5616
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020600 [exp]	30.39	0.5571
AT5G14610			DEAD box RNA helicase family p...		Potri.017G071400 [exp]	32.03	0.5908

Compare expression of checked genes

Potri.018G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.