Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20300 797 / 0 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT3G16620 488 / 7e-158 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT2G16640 488 / 1e-156 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT4G02510 459 / 1e-143 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT5G05000 101 / 3e-23 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 99 / 2e-22 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G15810 74 / 4e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09950 45 / 0.0002 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063500 [exp] 1285 / 0 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.009G131200 [exp] 498 / 2e-158 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 491 / 5e-156 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131300 [exp] 474 / 7e-152 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.010G014300 [exp] 443 / 5e-139 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G224900 [exp] 433 / 1e-136 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 415 / 1e-129 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.014G109400 [exp] 89 / 4e-19 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.002G183400 [exp] 88 / 9e-19 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027712 [exp] 794 / 0 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10006471 [exp] 790 / 0 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10005063 [exp] 486 / 7e-155 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10006048 [exp] 449 / 2e-141 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10043414 [exp] 265 / 2e-78 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10027835 [exp] 262 / 7e-74 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10004619 [exp] 241 / 2e-73 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10034170 [exp] 255 / 8e-73 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10028707 [exp] 207 / 2e-60 AT4G02510 498 / 2e-165 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10028706 [exp] 220 / 3e-60 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF04548 [poplar] [flax] AIG1 AIG1 family CL0023 [poplar] [flax] PF11886 [poplar] [flax] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Potri.018G123300.2 pacid=42802222 polypeptide=Potri.018G123300.2.p locus=Potri.018G123300 ID=Potri.018G123300.2.v4.1 annot-version=v4.1 ATGAAGGGTGTTAGAGATTGGGTTTTTGGTCAGCTATTATCTAAGTCTTTGGCTTCAACTAGACCTTTGTCAGGCAGTGGCAGTTTCTTAAGCGAGGAGC CTGTTAATGAAGATTCTGATGACCCAGGTCACATGGCCCGGTCAGAGTCTTCATCACCAACTTCTGATACTTCATGCTCTTCTAGCTGCAATCAAGAAAC TGGGTCTCCTCAATCTCTGCAGCAAGTGGCTGAAGATTCTTGTCAATCTATTCAGGGGGTTGAGGTCAAGAAAGCTGATCCATTGACCAAGATTGAGGAT CTCCGAATCAACTTCTTCCGCCTTCTTCTAAGGTTTGGGCAGTCACATGACAATCTTCTGGTGGCAAAGGTTTTGCATAGATTGCAGCTAGCAGCTTCAA TACGAGCAGAGGAAATGAATTTAATAAGAGTTAAAGTTGATAGAGCTAGAGCTGTAGCAGCAGAACAAGAGGCATCTGGAATACCCGAATTGAACTCCTC TCTTAGAATACTTGTGTTGGGTAAAACAGGTGTTGGAAAGAGTGCAACTATAAATTCTGTTTTTGATCAAACAAAGGCACTGACTGATGCATTTCGACCA GCCACTATTCACATCAAAGAGGTTGTGGGGTCTATCAATGGGGTCAAAGTAACATTTATTGACACCCCTGGTTTTTTACCTTCATCCACAAGTAATTTGA GAAGAAATAGGAAGATTATGTTTTCTGTTAGGAGATTCATTAGGAAATCACCACCGGACATTGTTCTATTCTTTGAACGCCTGGACCTCATCAACATGGG TTACTGTGACTTCCCCCTTCTGAAGCTTATGACTGAAGTCTTTGGCAATGCCTTTTGGTTTAATACCATCCTTGTCATGACTCACGGTTCTGCAACTCCT GAAGGACCTAGTGGATTTCCTATTACCTATGAATCATATGTGACCCAATGTGCAGATTTGATGCAGCATTACATAAATCAGGCAGTGTCCGACTCAAAAC TTGAAAACCCGGTAGTTTTAGTGGAGAACGATCCTCACTGTAAAAAGAACTTCATGGGGGAAAGTGTTCTTCCCAATGGACAAGTTTGGAAATCTCATTT CTTATTATTATGCATATGCACCAAAGTTCTTGGCGATGCTAATACCCTCTTGGATTTCGAAGGTAGCATTGAATTGGGGCCATTGATTACCCCCCGGGTG CCTTCTCTGCCCCATCTTCTCTCATCTCTTCTAAAGCATCGCTCTACAACAGACTCAACTGGAGTGGAACAGGATGCTGATGAGATTTTACTTTCAGATG CAGAGGAGGAAGATGACTACAATCAACTACCTCCAATCCGAATCCTGACAAAATCACAGTTTGAAAAGTTGACTAAATCCCAGAAAAAAGACTACCTTGA CGAGCTGGATTACCGGGAAACACTATATTTGAAAAAACAATTAAAAGAAGAGTCTCAGAGGCGGAGGGAGAGGAGGCTTTCCAGAGAGGAAGATTGTGGA GTGGGGGATAATTCTGATCACCAGCAAGCCTCTCCTGAGGCTGTTTTGTTACCTGATATGGCAGTCCCTCCAAGTTTTGACTCGGATTGCACCATACACA AGTATCGCTGCCTTGTCACAAGTGACCAGTGGCTTGTGAGACCTGTTCTTGATCCTCACGGATGGGACCACGACGTGGGCTTTGATGGTGTAAACTTGGA GACAGCTATAGAAATAAGAAGGAATGTATATGCCTCAATCACAGGACAGATGAGCAAGGACAAGCAGGATTTCAGTATTCATTCTGAGTGCGCTGCAGCT TATGCAGATCCTAGGGGCCAAACTTATTCTGCAGCCCTTGATGTTCAGACTTCGTCTGGCAAAGGTATGATCTATACAGTTCATAGCAACACAAAGCTGA GGAATCTGAAGCAAAATGTTATTGAATGTGGAGTTTCCTTGACATCCTATGATAACAAGTACTATGTTGGTGCCAAGCTTGAAGATACAATCTTGGTTGG GAAGCGACTCAAAGTTGTAGTGAATGCTGGCCAAATGAGGGGCCCTGAACAAGTGGCATATGGTGGGACTTTAGAGGCCACGTTAAAAGGGGGAGACTAC CCTGTGAGGGATGATAGAATCAGTCTGTCAATGTCAGCTCTCTCCTTTAAGAATGAGATGGTGTTGGGTGGAGGTTTTCAGTCTGAGTTTAGACCAATCC GAGGCATGAGAATGGCTGTTAATGCCAATCTGAATAGCCAGAACATGGGGCAAGTTAATATAAAGATTAGCAGCTCAGTGCACATTGAAATTGCTCTCGT TGCTGTTTTCTCAATTTTCAAGGCCATTTTGCGTAAGAAAGTGACTGAAAACAAAAGCAGGGAACTATTGAAGATGGGATGA
AA sequence Show only first row Show all	>Potri.018G123300.2 pacid=42802222 polypeptide=Potri.018G123300.2.p locus=Potri.018G123300 ID=Potri.018G123300.2.v4.1 annot-version=v4.1 MKGVRDWVFGQLLSKSLASTRPLSGSGSFLSEEPVNEDSDDPGHMARSESSSPTSDTSCSSSCNQETGSPQSLQQVAEDSCQSIQGVEVKKADPLTKIED LRINFFRLLLRFGQSHDNLLVAKVLHRLQLAASIRAEEMNLIRVKVDRARAVAAEQEASGIPELNSSLRILVLGKTGVGKSATINSVFDQTKALTDAFRP ATIHIKEVVGSINGVKVTFIDTPGFLPSSTSNLRRNRKIMFSVRRFIRKSPPDIVLFFERLDLINMGYCDFPLLKLMTEVFGNAFWFNTILVMTHGSATP EGPSGFPITYESYVTQCADLMQHYINQAVSDSKLENPVVLVENDPHCKKNFMGESVLPNGQVWKSHFLLLCICTKVLGDANTLLDFEGSIELGPLITPRV PSLPHLLSSLLKHRSTTDSTGVEQDADEILLSDAEEEDDYNQLPPIRILTKSQFEKLTKSQKKDYLDELDYRETLYLKKQLKEESQRRRERRLSREEDCG VGDNSDHQQASPEAVLLPDMAVPPSFDSDCTIHKYRCLVTSDQWLVRPVLDPHGWDHDVGFDGVNLETAIEIRRNVYASITGQMSKDKQDFSIHSECAAA YADPRGQTYSAALDVQTSSGKGMIYTVHSNTKLRNLKQNVIECGVSLTSYDNKYYVGAKLEDTILVGKRLKVVVNAGQMRGPEQVAYGGTLEATLKGGDY PVRDDRISLSMSALSFKNEMVLGGGFQSEFRPIRGMRMAVNANLNSQNMGQVNIKISSSVHIEIALVAVFSIFKAILRKKVTENKSRELLKMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20300		Toc90	translocon at the outer envelo...		Potri.018G123300 [exp]	0	1
AT3G18770			Autophagy-related protein 13 (...		Potri.001G309800 [exp]	3.46	0.9210
AT5G51910	TCP	TCP19	TCP family transcription facto...		Potri.012G135900 [exp]	4.89	0.9172
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Potri.012G043200 [exp]	5.09	0.9142	MKK9.1
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	6.78	0.9220
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.010G022400 [exp]	13.49	0.9240
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Potri.019G100800 [exp]	14.49	0.9193	Pt-RMA1.1
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.009G043100 [exp]	17.94	0.8951
AT5G03430			phosphoadenosine phosphosulfat...		Potri.006G123000 [exp]	20.49	0.9139
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	20.61	0.9201
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.002G010900 [exp]	21.35	0.9153

Compare expression of checked genes

Potri.018G123300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.