Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33280 1166 / 0 Voltage-gated chloride channel family protein (.1) AT5G49890 857 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT3G27170 792 / 0 ATCLC-B, CLC-B chloride channel B (.1) AT5G40890 778 / 0 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT5G26240 508 / 2e-169 ATCLC-D, CLC-D chloride channel D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064000 [exp] 1316 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.004G228300 [exp] 888 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.003G001500 [exp] 884 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.T046200 [exp] 857 / 0 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 846 / 0 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.001G331700 [exp] 794 / 0 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.010G090100 [exp] 525 / 7e-176 AT5G26240 1149 / 0.0 chloride channel D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038118 [exp] 1157 / 0 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10007433 [exp] 892 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 890 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10012526 [exp] 782 / 0 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10002453 [exp] 525 / 7e-176 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 511 / 2e-170 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10041567 [exp] 229 / 7e-69 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 174 / 6e-50 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain PF00654 [poplar] [flax] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Potri.018G124100.2 pacid=42800460 polypeptide=Potri.018G124100.2.p locus=Potri.018G124100 ID=Potri.018G124100.2.v4.1 annot-version=v4.1 ATGGCAACAAATTCTATCAATGGAGAATCAAACGACGACCACGAGTCTGTTACCATTCCTCTTCTTACCTCTGAAAGATCAAATGTCAACTCCACTTCTC AAGTTGCCATCGTTGGAGCTAATGTCTGCCCCATTGAAAGTCTTGATTACGAGATTGCTGAGAATGATCTCTTTAAACAAGATTGGAGGAGTGGTGGGAA GATACAAATATTCCAGTATGTGTTCATGAAGTGGTTGCTTTGTTTCTTGATTGGCCTGATTGTTAGCCTTATTGGGTTTTTTAATAATCTTGCTGTGGAA AATATTGCTGGCTTGAAGTTTGTGGTCACCTCCAATATGATGCTGGCCAAAAGGTTTGGGATGGCTTTTCTTGTGTTCTCAGTTTCTAATTTGACTCTTA CCCTTTTTGCATCTATCATCACCGCTTTTATAGCACCAGCTGCTGCTGGTTCAGGTATTCCAGAAGTTAAGGCTTACCTGAATGGTGTGGATGCGCCAGG AATATTTTCCTTGCGAACCTTGATTGTTAAGATTATTGGAAGCATATCCGCAGTTTCCTCATCTCTTTTTGTTGGAAAGGCAGGGCCAATGGTGCACACT GGAGCATGTGTTGCAGCATTGCTTGGTCAGGGTGGATCCAAAAGATTTAGATTAACATGGAGATGGCTTCATTTTTTCAGAAATGACCGAGACCGACGAG ATCTTGTAACATGTGGGTCAGCTGCTGGAATTGCTGCTGGCTTCCGCGCCCCAGTTGGAGGTGTGCTGTTTGCACTTGAAGAAATGGCATCTTGGTGGAG AAGTGTCCTTCTTTGGAGATCTTTCTTCACAACAGCAGTAGTTGCAATAGTGCTGCGGGCTCTGATTGATTTTTGTTTAAGTGGAAAATGTGGGTTATTT GGCAAAGGAGGGCTCATAATGTTTGATGTGTATTCAGCAAGTGTTACATACCACCTCATTGATGTTCCTCCTGCGCTTGCCCTTGGAGTTATAGGAGGCA TATTGGGAAGTTTGTATAACTTCCTTTTAGACAAGGTTCTTCGGATTTACAACCTCATCAACGAGAAAGGCATTGCTTACAAAATTTTTCTTGCTTGTGC AATTTCTGTTTCCACATCCTGTCTTCTTTTTGGACTACCGTGGCTTGCCTCTTGCCAACCTTGTCCATCTGATGCATCTGAATCCTGTCCAACAATAGGC CGGTCTGGTAACTTCAAGAAATTTCAATGTCCTCCTGGACATTACAATGATCTGGCCAGCCTTATATTTAATACAAATGATGATGCTGTAAGAAATCTTT TCAGCAAGAACACCAACTCCGAGTTTCAATATTCGTCAATTCTCATATTCTTTGTGACCTGCTTTTTTCTTAGCATCTTTAGCTGTGGGATTGTTGCCCC TGCGGGTCTTTTCGTTCCTGTTATTGTGACTGGTGCATCTTATGGACGTTTTGTTGGAATGCTAGTTGGTTCGCACTCAAGTCTTAATCATGGCCTCTAT GCTGTCCTAGGTGCTGCTTCATTTTTAGGTGGATCTATGAGGATGACAGTTTCTCTGTGTGTTATTATCCTAGAATTGACCAATAATCTGTTGCTGCTAC CCTTGATAATGCTTGTTCTTCTTATTTCCAAGACCGTGGCTGATGCTTTCAATGGTAATATTTTTGATCTTATCATGAAAGCAAAGGGCTTTCCTTACCT AGAGTCTCATGCCGAGCCCTATATGAGGCAGTTGACTGTTGGTGATGTAGTAACTGGTCCACTCCAGGTCTTTCAGGGCATCGAGAAGGTTGGCAACATA GTACATGTTCTGAGAACTACAAGGCATAATGGATTTCCTGTGGTTGATGAGCCTCCACTTTCCGAGCCTCCAGTTCTTTATGGTCTTATCCTCCGTGCTC ATCTTATTGAATTGCTAAAGAAGAAAGCTTTCATGTCCGCTCCAGTGCCAACAAGCATTGATGCCTTAAAGCTGTTCTCTGCTGGTGATTCTGCAGAGAG GGGCTCAGGCAATGGAGACAAGATAGAGGAACTACGATTTACTGAAGAAGAGATGGAGATGTTTTTAGATCTACATCCATTTACTAATGCTTCACCATAC ACTGTTGTGGAGACAATGTCACTGGCCAAGGCTCTCATACTTTTCCGAGAAGTTGGTTTGAGGCATTTATTGGTGATGTCCAGGATATCTGGTAGGTCCC CTGTTGTGGGTATACTGACTAGGCACGATTTCATGCCAGAACATATACTTGGTCTGCATCCTTTGCTGATTAGAAGCAGGTGGAAAAGATTAAGAATCCG GGTGCCGCGTGTATTCAAATTCTTCTAG
AA sequence Show only first row Show all	>Potri.018G124100.2 pacid=42800460 polypeptide=Potri.018G124100.2.p locus=Potri.018G124100 ID=Potri.018G124100.2.v4.1 annot-version=v4.1 MATNSINGESNDDHESVTIPLLTSERSNVNSTSQVAIVGANVCPIESLDYEIAENDLFKQDWRSGGKIQIFQYVFMKWLLCFLIGLIVSLIGFFNNLAVE NIAGLKFVVTSNMMLAKRFGMAFLVFSVSNLTLTLFASIITAFIAPAAAGSGIPEVKAYLNGVDAPGIFSLRTLIVKIIGSISAVSSSLFVGKAGPMVHT GACVAALLGQGGSKRFRLTWRWLHFFRNDRDRRDLVTCGSAAGIAAGFRAPVGGVLFALEEMASWWRSVLLWRSFFTTAVVAIVLRALIDFCLSGKCGLF GKGGLIMFDVYSASVTYHLIDVPPALALGVIGGILGSLYNFLLDKVLRIYNLINEKGIAYKIFLACAISVSTSCLLFGLPWLASCQPCPSDASESCPTIG RSGNFKKFQCPPGHYNDLASLIFNTNDDAVRNLFSKNTNSEFQYSSILIFFVTCFFLSIFSCGIVAPAGLFVPVIVTGASYGRFVGMLVGSHSSLNHGLY AVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPLIMLVLLISKTVADAFNGNIFDLIMKAKGFPYLESHAEPYMRQLTVGDVVTGPLQVFQGIEKVGNI VHVLRTTRHNGFPVVDEPPLSEPPVLYGLILRAHLIELLKKKAFMSAPVPTSIDALKLFSAGDSAERGSGNGDKIEELRFTEEEMEMFLDLHPFTNASPY TVVETMSLAKALILFREVGLRHLLVMSRISGRSPVVGILTRHDFMPEHILGLHPLLIRSRWKRLRIRVPRVFKFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G33280			Voltage-gated chloride channel...		Potri.018G124100 [exp]	0	1
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.002G224100 [exp]	9.38	0.9378	ACO2,ACO1.1
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.012G096800 [exp]	12.96	0.9372
AT4G37290			unknown protein		Potri.007G049400 [exp]	16.34	0.9336
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.003G109700 [exp]	16.49	0.7036	KUP10.2
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.007G118600 [exp]	22.02	0.9307
AT1G12640			MBOAT (membrane bound O-acyl t...		Potri.003G121700 [exp]	22.36	0.7322
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G087000 [exp]	24.49	0.9270
					Potri.006G038300 [exp]	24.61	0.9283
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030400 [exp]	26.32	0.9270
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	30.29	0.9266

Compare expression of checked genes

Potri.018G124100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.