Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CRCK3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11520 501 / 1e-174 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT4G00330 344 / 3e-114 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G58940 338 / 2e-111 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT1G06840 239 / 2e-69 Leucine-rich repeat protein kinase family protein (.1) AT3G24790 223 / 3e-68 Protein kinase superfamily protein (.1) AT3G24540 227 / 7e-68 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G39000 233 / 1e-67 Malectin/receptor-like protein kinase family protein (.1) AT1G10620 230 / 3e-67 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT2G39360 230 / 7e-67 Protein kinase superfamily protein (.1) AT3G07070 221 / 7e-67 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064200 [exp] 814 / 0 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.014G087200 [exp] 360 / 2e-120 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 357 / 7e-119 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 326 / 9e-107 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.017G096400 [exp] 234 / 2e-71 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 243 / 4e-71 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.001G204000 [exp] 230 / 7e-71 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.005G143700 [exp] 238 / 1e-69 AT5G24010 566 / 0.0 Protein kinase superfamily protein (.1) Potri.005G144100 [exp] 237 / 2e-69 AT5G24010 550 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028613 [exp] 592 / 0 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 558 / 0 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10041796 [exp] 555 / 0 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 499 / 5e-174 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018828 [exp] 351 / 9e-117 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10036376 [exp] 349 / 3e-116 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 346 / 2e-113 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10014760 [exp] 338 / 6e-105 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10040704 [exp] 319 / 6e-104 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10018203 [exp] 321 / 3e-99 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G124600.4 pacid=42801343 polypeptide=Potri.018G124600.4.p locus=Potri.018G124600 ID=Potri.018G124600.4.v4.1 annot-version=v4.1 ATGGCTATGAATGCATTGATTCTATTGTTATTGGTGCAATTTCCGATTATACTGGCCTCAAGGTTTTCTATACATTCAAAGGTTTGTGGTTCTGATCATA TAGCCTATTCAAATTTTCACGGTCATGAATTGTTTTACATTAATGGGGAGCTCAAAGACAAAGAATCATTTTGCAAGGCCTTCCATTTCCTCGATGTAAA TGCTTGTATCTTTGAGAACTACCTTGGGAGTAGCTCCAGTGGATTGGACCCGGACCTTTCTTTAGCTGGCTTTCCTCTGAAGCGAGAAAGAAATCTTCTG CAAAAGGAGGGTAGAGAAGAATCCACAAGTCATGATCCTAGTCAGGATACTCCAAAAGAGAAGAAGGATGATCCAGCAACTCTTTCAACTCCCTATAAAG CTGGGTTAGCAGTGGCAGGAGTTGTTGTTATGTGTTGTGGTTTTCTCTGCCCGTGTCTATATAAGAAAAGGAAACCAGCCACGCACACTGTTCTTGAAAA GGATCCAAACTCACTGGATTCAGTACCCTCGTTCAATGCGAATCCTGCTTCTGAAAAAGTGCTGTCCACTCCACATCGGGTGCCACCTAGTCCTTCTAGA TTCTCTCCATCTCCAAAACTCAGTAGATTAGGATCAGTTCATCTCAATCTGAGTCAGGTTGCTAGAGCCACACGTAATTTTTCTCCATCACTTCAGATAG GCGAAGGAGGCTTTGGAATTGTCTACAAGGCCCAACTAGACAACGGTCAGTTGGTTGCCATAAAACGAGCAAAGAAGGAATACTTTGTGAACTTACAAAC TGAATTCAGCAGTGAAGTTGAACTTCTGGCCAAAATTGATCATCGGAATCTGGTGAAGTTGCTTGGTTATGTTGATAAAGGAGATGAACGCCTTATTATT ACAGAGTATGTGCCCAATGGTACTCTCAGAGAACATCTGGATGTTCTGCATGGCAAAATCCTGGATTTCAACCAGCGGCTTGAAATATCCATTGATGTTG CTCATGGATTAACTTATCTCCATCTATATGCAGAGAAGCAAATAATTCATCGAGACGTGAAGTCATCCAACATTCTTTTGACAGAGAGCATGAGAGCCAA AGTGGCAGACTTTGGATTTGCTAGGATGGGTCCAGTAGACTCTGATCAAACTCATATCTCAACCAAAGTGAAGGGGACAATGGGTTACCTAGACCCTGAA TATATGAAGACCTATCAACTTACCCCCAAGAGTGATGTGTACTCATTTGGGATTTTACTTCTGGAAATCCTGACAGGACGGCGCCCTGTGGAGATGAAGA AACCTGCTGATGAGCGGGTGACACTTAGATGGGTCTTTAGGAAGTACGAGGAAGGAAATGTAGTGGACATGGCGGACCCGCTTATGGAAGAAGTGGTGGA CGCAGAGATACTATCCAAAATGTTTGCCTTAGCAATCCAGTGTGCAGCACCCATTCGCACCGAACGACCGGACATGAAAGTAGTAGTTGAGCAGTTGTGG GGAATAAGATCTGACTACCTGAAAGGTGTAAAGAAAGGGTAA
AA sequence Show only first row Show all	>Potri.018G124600.4 pacid=42801343 polypeptide=Potri.018G124600.4.p locus=Potri.018G124600 ID=Potri.018G124600.4.v4.1 annot-version=v4.1 MAMNALILLLLVQFPIILASRFSIHSKVCGSDHIAYSNFHGHELFYINGELKDKESFCKAFHFLDVNACIFENYLGSSSSGLDPDLSLAGFPLKRERNLL QKEGREESTSHDPSQDTPKEKKDDPATLSTPYKAGLAVAGVVVMCCGFLCPCLYKKRKPATHTVLEKDPNSLDSVPSFNANPASEKVLSTPHRVPPSPSR FSPSPKLSRLGSVHLNLSQVARATRNFSPSLQIGEGGFGIVYKAQLDNGQLVAIKRAKKEYFVNLQTEFSSEVELLAKIDHRNLVKLLGYVDKGDERLII TEYVPNGTLREHLDVLHGKILDFNQRLEISIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFARMGPVDSDQTHISTKVKGTMGYLDPE YMKTYQLTPKSDVYSFGILLLEILTGRRPVEMKKPADERVTLRWVFRKYEEGNVVDMADPLMEEVVDAEILSKMFALAIQCAAPIRTERPDMKVVVEQLW GIRSDYLKGVKKG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	0	1	Pt-CRCK3.2
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.013G153400 [exp]	2.00	0.9389
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.009G151700 [exp]	2.44	0.9179
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	3.00	0.9327	CBP60.12
AT1G24140			Matrixin family protein (.1)		Potri.015G103900 [exp]	3.16	0.9372
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019800 [exp]	4.58	0.9167
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	6.00	0.9220
AT3G48990			AMP-dependent synthetase and l...		Potri.001G105900 [exp]	6.00	0.8952
AT5G35735			Auxin-responsive family protei...		Potri.002G222700 [exp]	6.70	0.9210
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	7.48	0.9141
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.016G128300 [exp]	9.48	0.9123	WRKY33.1

Compare expression of checked genes

Potri.018G124600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.