Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20260 534 / 0 Exostosin family protein (.1) AT5G11130 461 / 6e-160 Exostosin family protein (.1) AT3G42180 459 / 4e-159 Exostosin family protein (.1.3) AT5G33290 444 / 4e-153 XGD1 xylogalacturonan deficient 1 (.1) AT5G03795 404 / 5e-137 Exostosin family protein (.1) AT3G07620 359 / 6e-120 Exostosin family protein (.1) AT5G25310 354 / 6e-118 Exostosin family protein (.1) AT4G16745 299 / 7e-96 Exostosin family protein (.1.2) AT4G32790 273 / 4e-85 Exostosin family protein (.1) AT5G19670 273 / 6e-85 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124607 [exp] 859 / 0 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 625 / 0 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 582 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.T124707 [exp] 582 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.006G064800 [exp] 578 / 0 AT5G20260 556 / 0.0 Exostosin family protein (.1) Potri.006G064900 [exp] 573 / 0 AT5G20260 530 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 529 / 0 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 501 / 5e-176 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 501 / 7e-176 AT3G42180 524 / 0.0 Exostosin family protein (.1.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005186 [exp] 503 / 2e-176 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10027707 [exp] 488 / 2e-170 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10039980 [exp] 480 / 6e-166 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10039142 [exp] 417 / 2e-141 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 406 / 4e-137 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 373 / 3e-125 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10001917 [exp] 372 / 1e-124 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10008751 [exp] 369 / 5e-123 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 348 / 2e-117 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10002799 [exp] 291 / 1e-91 AT5G25820 627 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.018G124945.1 pacid=42801212 polypeptide=Potri.018G124945.1.p locus=Potri.018G124945 ID=Potri.018G124945.1.v4.1 annot-version=v4.1 ATGGAAACTATATGTAATGGCTCTAACGTTGGTTTTATGCTACTGCCGGTTGTTGTTTTCGCTTCGCTTATTGTCTACTTTGGTTCTCCCTTGAACCAGA ATACCAATACTGTGGGATATTTTTCTTCGTTTTCTACATCAAATACTGTCTATACTAAAGCTAACGAGCTTGTTTTTGAAAGCTCTCAACCCTCTCCGTC ACAGCCACACCAGTTGCCAACGCAGATAAAGAGAGGCAGAGAGAAGATTGAAGATGGTTTGGCAAGAGCAAGAGCAGCAATTCTGGACGCGGCGCGGTTG AAAAACTACACATCATACAAGGAAGGAACTTACATTCCGAAAGGGGTCATATACAGAAATCCTTACGCTTTTCATCAGAGCCATACAGAGATGGAGAAGA GATTCAAGATATGGGTTTACAAGGAAGGAGAGCGACCTCTTGTCCATGGTGGACCCTTAAACAACATCTACGGCGTTGAAGGTCAGTTTCTTGATGAGAT GGAGCATGGAAAGAGCCCCTTTGCTGCTAGTCACCCCGATGAGGCACACATGTTTCTCCTACCCATAAGCGTGGCCTATATCATCAGCTATGTCTACAAG CCTATTGTCACGTATTCTCGTGATGAACTGCAACGTTTGGTCCAAGATTATGTTGGTGTTGTAGCCGACAAGTACCCTTACTGGAATAGAAGTAAAGGAG CTGATCATTTCTTGGTTTCTTGCCATGATTGGGCACCGGATATTTCTGGAGCCAATCCTGATCTGTACAAGAACTTCATAAGGGTCCTTTGCAATGCCAA TACATCAGAAAGATTCGAGCCTCGAAGAGATGTTTCAATACCAGAAATCAACATTCCTAATGGCAAGCTCGGACCGCCCCATAAAGGCCTGCCCCCAAGT AAGCGTTCGATTTTTGCATTTTTCGCTGGAGGAGCTCATGGTTATATCAGGAAGGTGTTACTGGAGAACTGGAAAGATAAAGATGACGAGATTCAAGTCC ATGAATACCTTGATAAAAAGGGAACAGATTACTTCGAATTAATGGGTCAAAGCAAGTTTTGCCTCTGTCCAAGTGGGTATGAAGTAGCAAGTCCAAGAGT GGTGACGGCAATTCAATTAGGTTGTGTGCCTGTGACTATTTCAGATAACTATACGTTGCCGTTTAGTGATGTTCTCGATTGGAGCAAGTTTTCAGTGCAT ATTCCGTCCGAGAAGATACCTGAAATCAAAACAATCTTGAAAAAGATTTCTCCGCGAAGGTATCTGATAATGCAAATGAGAGTGATACAAGTGCAAAGAC ATTTCGAATTGAATCGACCGGCTCGGCCATATGATCTGCTTCATATGCTACTTCACTCGGTATGGGTAAGGAGGCTCAATGTCAAGGTGCCATATCGATA A
AA sequence Show only first row Show all	>Potri.018G124945.1 pacid=42801212 polypeptide=Potri.018G124945.1.p locus=Potri.018G124945 ID=Potri.018G124945.1.v4.1 annot-version=v4.1 METICNGSNVGFMLLPVVVFASLIVYFGSPLNQNTNTVGYFSSFSTSNTVYTKANELVFESSQPSPSQPHQLPTQIKRGREKIEDGLARARAAILDAARL KNYTSYKEGTYIPKGVIYRNPYAFHQSHTEMEKRFKIWVYKEGERPLVHGGPLNNIYGVEGQFLDEMEHGKSPFAASHPDEAHMFLLPISVAYIISYVYK PIVTYSRDELQRLVQDYVGVVADKYPYWNRSKGADHFLVSCHDWAPDISGANPDLYKNFIRVLCNANTSERFEPRRDVSIPEINIPNGKLGPPHKGLPPS KRSIFAFFAGGAHGYIRKVLLENWKDKDDEIQVHEYLDKKGTDYFELMGQSKFCLCPSGYEVASPRVVTAIQLGCVPVTISDNYTLPFSDVLDWSKFSVH IPSEKIPEIKTILKKISPRRYLIMQMRVIQVQRHFELNRPARPYDLLHMLLHSVWVRRLNVKVPYR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20260			Exostosin family protein (.1)		Potri.018G124945 [exp]	0	1
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.001G118800 [exp]	2.00	0.8997
AT4G25433			peptidoglycan-binding LysM dom...		Potri.012G135100 [exp]	2.82	0.8840
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.006G018000 [exp]	3.46	0.8961
AT5G42785			unknown protein		Potri.002G034300 [exp]	4.00	0.8706
AT5G27020			unknown protein		Potri.013G011950 [exp]	4.89	0.8752
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.011G058400 [exp]	5.47	0.8772
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.006G057600 [exp]	5.74	0.8006
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.012G080000 [exp]	6.00	0.8689
AT2G32800		AP4.3A	protein kinase family protein ...		Potri.017G055000 [exp]	6.48	0.8717
AT1G02630			Nucleoside transporter family ...		Potri.018G130200 [exp]	8.66	0.8182

Compare expression of checked genes

Potri.018G124945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.