Plant FIBer expression Database

Potri.018G125171 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G11000 863 / 0 ATMAK10 MAK10 homologue (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T124807
[exp]
1459 / 0 AT2G11000 863 / 0.0 MAK10 homologue (.1.2)
Potri.006G065000
[exp]
1298 / 0 AT2G11000 889 / 0.0 MAK10 homologue (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005185
[exp]
1088 / 0 AT2G11000 889 / 0.0 MAK10 homologue (.1.2)
Lus10038121
[exp]
1087 / 0 AT2G11000 897 / 0.0 MAK10 homologue (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04112 Mak10 Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
Representative CDS sequence
>Potri.018G125171.1 pacid=42800466 polypeptide=Potri.018G125171.1.p locus=Potri.018G125171 ID=Potri.018G125171.1.v4.1 annot-version=v4.1
ATGGACTGGAAGAGCACAGAGCAAGCATCGATGGAGCGTCACGCACCGAATCACTCCTCCTCCACCTCCTCATCAATTCCTGCAACTGAAAACACTGTTT
GGGCCGACGCGTCGCCTCTCCTTGAAACCGTTTGTAAAGAATTACGCGACGGTGAGCTAATTCATGGCGAGAATTTCAATCTATATGCTGCAATGTCTGC
TCTAGAGATTATGGACCCGAAGATGGATTCTGGAATCATCAACAAGTATGCTTCAGTTGATGAAGCGATCGAAGACGGTTTGGCTCCTGTACCTATTAGC
CTTGACAAAACTGTTGATGTTCAGTGCATCATTGACATCATCGACCAACTCTTAGCGTGTGAGGCAACATGGCACAAGGGTCACTCGTTGGCACAGACTG
TTTTTTCATGCGCCTACCTTCTGAGACCAGAGAGGACATTATCACATGCCCTATTGGATTCTTATTGCAAAGTCATCCGTGCAACGTGCAAGGCAGTGAC
TTCAATTGTCTCAGATGCACGCACACATGAAGAAGAGGATCTGTTTACAATGGCTTATGGTCTTCCTCTGAACGTGGAAGGAGATGAAAAGTGCTTGTCG
TTGTTAAATGCTGTCGAAGAGAATATTTCTCGCCAGCTGCGAGCTTGCAAAGCTCTGCCCTCCAAAAGAAAACCGTTAGAGGATATAGAGCCTCTACAAA
ATAATTTTGATCTGGAAGAAGGCTACTGCAAAGCATTGTTATGCCGCTTACGCTTTCGTAAGCACTTTTGCCATGTTTTAACCTGCATGAGGCGACCTCA
AGGAAGAGGTCTAGAGTTGGCAAGAAAACATATAGCTTCCTGCATTTCAGAGCTAGGAAGCATTCTTAACTCAGCAGAATTCCTAATGTCTAATGCCTAT
GGAACTTGCGAAGATGGTACAGAAGATAGAACAACTGCTTCTGGCCGTCAAGCTATTGGGTTTGATGCTAATTTAAACAGCAGAATTTCAGCCCCAACTC
CACCACGTTCAATTAAAATTCTTAGTTGGAAAAAGGCCATCGAGTATTTTGAAAAACTTCTTCATCATCTAGATATCATATGCTCATACCTGTTGGACCC
TTCTTTGGATGTTCTTTTGCGCTTTGTGGCTCAATTTCAAAAAGCACAACCTGATTTGGTTGCAAGAGTGCATCTCCAGCTTCTGTTGGTTCAAGATGGA
AAACTCTATGGGCGGTATCCTATCTTAGCTGTGATTATTAGAGCTGCACGGTTGCCTGAGGTCATTATGCGCCATGATATTCAGAAGAATGAATATGTTG
TGCAGTTAGGACAGATAGTGATCAACATGCTCAAGGTTCTTTGCACAAATGCTGCATGGCAGAGGCGTAAACTTGGAAAGATTTTACAAGATTGGCGGGC
TATCTATGTACAGCTAGAGCTTGCATTCAGAAAGGAGTTTGGAGAAGGCTCGAGCATTTCAAATGGCGAGAATGCATCAGCAGGAATATTAAAACACATC
CTCATTTGGGTGGAGGAGCAAACTTATTGGATTGCCCATCGATTTCTCGTTCTTGGTTTCGAATTGGAGCTCTATTCTCCCAGCGAATATTGCATGGTGT
ATTGGTATTTATATGTTGTCTTGATCAGGCTTGCAGAGAAAACACATCTGAAGATGACAGTGAGTGATGGCAGTGCTAAACAGAAGGGAAAGAAAAGAAA
GGATTCTCCGAAAGATCTGGCAAGAGAAGCTCGGATCCCACCAGCAATCTCGTTTCTTCAATGCCAAATATGTCTTGCTGAGGGGCTCGCACTGCTACTC
GCTGCTCTGAGGAATGAACTGATGGTCTTACAATCTCCCAGCCCGTTTAATTCTGAACATGAGAGGTTTATACAGCATTTTGAACTTCTACAAAAAGCTT
GTATCCCTGATCTCATTTCATACCCCTCGTTCAAGGAATCCACTTCCAATGCTCGCTTCTCCAGTTTGGTTATGTATAATTACTTCAAGGATGCACAGAA
GATTGCAAAGGAGGTCAAGAGTAGTTTTCTTAATGACCCAGACAGATTAGCTGAACTTTGCATATTGGAGCAGGTTGCAGAGCACAATAGTGTTGCCCTA
AATGTGATTTCCCGAGTCGGAGCTCTTGACCCGTCCCTCAAGGTTTCTTTCGAGTTCATCCACCACCCATGTTTTGCCACTGTTGTTGTCAAGAGATCTT
GA
AA sequence
>Potri.018G125171.1 pacid=42800466 polypeptide=Potri.018G125171.1.p locus=Potri.018G125171 ID=Potri.018G125171.1.v4.1 annot-version=v4.1
MDWKSTEQASMERHAPNHSSSTSSSIPATENTVWADASPLLETVCKELRDGELIHGENFNLYAAMSALEIMDPKMDSGIINKYASVDEAIEDGLAPVPIS
LDKTVDVQCIIDIIDQLLACEATWHKGHSLAQTVFSCAYLLRPERTLSHALLDSYCKVIRATCKAVTSIVSDARTHEEEDLFTMAYGLPLNVEGDEKCLS
LLNAVEENISRQLRACKALPSKRKPLEDIEPLQNNFDLEEGYCKALLCRLRFRKHFCHVLTCMRRPQGRGLELARKHIASCISELGSILNSAEFLMSNAY
GTCEDGTEDRTTASGRQAIGFDANLNSRISAPTPPRSIKILSWKKAIEYFEKLLHHLDIICSYLLDPSLDVLLRFVAQFQKAQPDLVARVHLQLLLVQDG
KLYGRYPILAVIIRAARLPEVIMRHDIQKNEYVVQLGQIVINMLKVLCTNAAWQRRKLGKILQDWRAIYVQLELAFRKEFGEGSSISNGENASAGILKHI
LIWVEEQTYWIAHRFLVLGFELELYSPSEYCMVYWYLYVVLIRLAEKTHLKMTVSDGSAKQKGKKRKDSPKDLAREARIPPAISFLQCQICLAEGLALLL
AALRNELMVLQSPSPFNSEHERFIQHFELLQKACIPDLISYPSFKESTSNARFSSLVMYNYFKDAQKIAKEVKSSFLNDPDRLAELCILEQVAEHNSVAL
NVISRVGALDPSLKVSFEFIHHPCFATVVVKRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G11000 ATMAK10 MAK10 homologue (.1.2) Potri.018G125171
[exp]
0 1
AT1G07705 NOT2 / NOT3 / NOT5 family (.1.... Potri.017G065900
[exp]
7.48 0.8177
AT2G06990 HEN2 hua enhancer 2, RNA helicase, ... Potri.018G146001
[exp]
12.36 0.8437
AT5G07670 RNI-like superfamily protein (... Potri.014G059100
[exp]
12.72 0.8225
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Potri.004G020300
[exp]
13.19 0.8459
AT2G31290 Ubiquitin carboxyl-terminal hy... Potri.005G191100
[exp]
14.83 0.8036
AT5G37930 Protein with RING/U-box and TR... Potri.004G091800
[exp]
15.49 0.8072
AT2G39140 PDE328, SVR1 SUPPRESSOR OF VARIEGATION 1, P... Potri.010G226801
[exp]
19.44 0.8150
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.014G117600
[exp]
23.08 0.7855
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.019G021200
[exp]
23.23 0.7829
AT5G46050 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE T... Potri.002G258832
[exp]
24.61 0.7259

Potri.018G125171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.