Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35200 645 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 451 / 2e-153 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 408 / 2e-136 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 400 / 3e-133 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 400 / 7e-132 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 226 / 2e-66 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 211 / 6e-61 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 203 / 1e-57 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 143 / 4e-36 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 131 / 2e-32 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125107 [exp] 955 / 0 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 850 / 0 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 472 / 1e-161 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 416 / 1e-144 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 416 / 6e-140 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 403 / 2e-134 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 401 / 8e-134 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 239 / 2e-71 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 214 / 9e-62 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038122 [exp] 755 / 0 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 754 / 0 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 468 / 1e-159 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 465 / 2e-158 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 407 / 7e-136 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 408 / 2e-133 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 398 / 3e-132 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 385 / 3e-128 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 239 / 1e-70 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 196 / 2e-54 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.018G125284.1 pacid=42801564 polypeptide=Potri.018G125284.1.p locus=Potri.018G125284 ID=Potri.018G125284.1.v4.1 annot-version=v4.1 ATGTCAGGAGGTGGAACCCAAAACAGTTTGAGGAGAGCACTCGGTGCCCTCAAGGATACTACCACTGTTTCATTGGCCAAAGTCAATAGTGATTACAAGG AATTGGATATTGCTATAGTGAAGGCCACAAATCACTATGAACGACCTGCAAAGGAAAGACACATTAGAGCTATTTTTGCTGCCGTTTCAGCTACTAGACC TCGCGCTGATGTTGCATATTGCATCCATGCTCTTGCACGGCGTTTATCAAGGACACATAACTGGGCGGTTGCATTGAAAACTTTAATCGTTATTCATCGG GCTTTGAGAGAAGTGGACCAGACGTTCCACGAGGAGATCATTAATTATGGAAGAAGCCGAAGCCATATGCTTAACATGGCCCATTTCAAAGATGATTCCA GTCCAAATGCATGGGATTTTTCTGCCTGGGTTCGCACCTATGCCTTATTTTTGGAGGAGAGGTTGGAATGCTTTCGCGTGTTGAAGTATGATGTTGAGAT GGATCGACCTCGGACCAAAGATCTGGACACAGTTGAAATACTGGAGCAACTGCCAGCTTTGCAACAGCTTCTTTTCCGCATTCTTGGTTGTCAGCCACAA GGGGCAGCAGCCAATAACTTTGTCATTCAGTTGGCACTCCAATTGGTGGCTTCCGAGAGCATTAGAGTTTATCAAGCTATAAATGATGCTACTGCCAATT TGGTTGACAAGTTCTTCGAGATGCAGCGCCCTGATGCTGCAAAGGCTCTGGAAATTTATAGAAGGGCTTGTCAGCAGGCAGAGAGACTTTCAGAATTTTA CGAGATATGTAAAAGCATGTATATTGGGCGTGGAGAAAAGTTTATAAAGATCGAGCAGCCTCCTTTATCATTCCTGCAAACCATGGAAGAGTATGTGCGA GATGCTCCAAGGGTGACAACAGCTCTGAGGGATCAGTTCGTTGATAATAAAATTGCTTCCCCTAAGGAAATCTTAGCCATAGAGTACAAGAAGGAACCAG AAGTAAAGGAGGAACGGCCATCATCACCACCTCCACCTGAACCAGTGAAGGTGGAAGAGCCTGTTGCTCAACCACCTGATTTGTTGGGGTTGGATGATCC TGTTCCAGTTGCTTCAGAGCTAGATGAGAAGAATGCCCTGGCTCTTGCAATTGTTCCAGTTGCTGAACAACAAAGTTCCCCTGTCCCAACACATGCAAAT GGAACTACAGGCTGGGAGCTGGCGCTTGTCACGGCTCCTAGTTCAAATGAAAGTACCGCTGCTGCTAGCAAACTGGCTGGAGGGCTCGATAAACTTACAT TAGACAGCCTCTATGATGATGCAATTAGAAGGAGCAATCAGCCTGTGAGCTACAATCCTTGGGAGCCAGTCCCAGTGGCTAATCCCATGATGCAAGCAGC CGTACATGATCCTTTCTTTGCATCCAACACAGTTGCTGCACCACATTCAGTGCAAATGTCCCAAATGGCCAGCCAACAGCAAGCTTTCATGTTGCAGCAG CAGCAGCAGCAGCAGATGATGATGATGATGATGATGGGCCAGCAACAACAGCAACCTTCAAATCATTTTGGAAACACTTATGGAAGCAGTGTCCACCCCT ATGGCTCAGGTATGCCGCCTGTTCAAGCATACAATCCATACTCGGGCTGA
AA sequence Show only first row Show all	>Potri.018G125284.1 pacid=42801564 polypeptide=Potri.018G125284.1.p locus=Potri.018G125284 ID=Potri.018G125284.1.v4.1 annot-version=v4.1 MSGGGTQNSLRRALGALKDTTTVSLAKVNSDYKELDIAIVKATNHYERPAKERHIRAIFAAVSATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHR ALREVDQTFHEEIINYGRSRSHMLNMAHFKDDSSPNAWDFSAWVRTYALFLEERLECFRVLKYDVEMDRPRTKDLDTVEILEQLPALQQLLFRILGCQPQ GAAANNFVIQLALQLVASESIRVYQAINDATANLVDKFFEMQRPDAAKALEIYRRACQQAERLSEFYEICKSMYIGRGEKFIKIEQPPLSFLQTMEEYVR DAPRVTTALRDQFVDNKIASPKEILAIEYKKEPEVKEERPSSPPPPEPVKVEEPVAQPPDLLGLDDPVPVASELDEKNALALAIVPVAEQQSSPVPTHAN GTTGWELALVTAPSSNESTAAASKLAGGLDKLTLDSLYDDAIRRSNQPVSYNPWEPVPVANPMMQAAVHDPFFASNTVAAPHSVQMSQMASQQQAFMLQQ QQQQQMMMMMMMGQQQQQPSNHFGNTYGSSVHPYGSGMPPVQAYNPYSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G125284 [exp]	0	1
					Potri.006G056101 [exp]	3.16	0.9448
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Potri.002G256600 [exp]	4.89	0.9259	Pt-IAA11.1
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Potri.016G134500 [exp]	5.29	0.9358
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.009G134600 [exp]	5.83	0.9002	RAC4.1
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.018G052500 [exp]	5.91	0.9326
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.001G050400 [exp]	6.00	0.9293
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	6.00	0.9410
AT1G67570			Protein of unknown function (D...		Potri.008G178100 [exp]	7.28	0.8887
AT5G01980			RING/U-box superfamily protein...		Potri.016G141600 [exp]	8.48	0.9220
AT1G22060			unknown protein		Potri.008G029800 [exp]	9.48	0.9176

Compare expression of checked genes

Potri.018G125284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.