Plant FIBer expression Database

Potri.018G125400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G10950 144 / 9e-40 BSD domain-containing protein (.1)
AT3G49800 117 / 3e-29 BSD domain-containing protein (.1)
AT5G65910 104 / 1e-24 BSD domain-containing protein (.1)
AT1G10720 92 / 1e-20 BSD domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T125207
[exp]
545 / 0 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1)
Potri.006G065200
[exp]
400 / 3e-139 AT2G10950 193 / 1e-58 BSD domain-containing protein (.1)
Potri.014G008400
[exp]
146 / 2e-39 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1)
Potri.007G006400
[exp]
143 / 7e-39 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1)
Potri.014G014200
[exp]
103 / 3e-24 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039982
[exp]
177 / 4e-52 AT2G10950 156 / 2e-44 BSD domain-containing protein (.1)
Lus10027706
[exp]
169 / 1e-49 AT2G10950 147 / 9e-42 BSD domain-containing protein (.1)
Lus10019271
[exp]
141 / 6e-38 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1)
Lus10011556
[exp]
140 / 2e-37 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.018G125400.1 pacid=42801506 polypeptide=Potri.018G125400.1.p locus=Potri.018G125400 ID=Potri.018G125400.1.v4.1 annot-version=v4.1
ATGTCTTGGCTTTTCAATTCGCTGCAATCCAACGATCCGGATTCACCACCACCGCACCCTCCTTCTCCGTCAGTTCAAGACGACCTGCTGGTCATCGGTG
ATTCTATCGGCCGTCAATTACGTGGCGTTGCTAACTTCCTTGCTCCGCCTCCACCTCCACCGCCGTCCAATACCCAAGCAGCCAAACCACAACCGTTCGA
TTCTTCTTCTCAATCATCACAAGCTCTCCTTGGGATTCGCAACGATCTCGCTGAAATCGGTGACAGTTTAAAATCAGGTCTCTCTAAATTCACTTCCAAT
TTCTTGCAATTTAAAGATATTAACAGTAAGAACAGTGATGGTGACGACGTGGCGGGGATTAATGAGGAAGTGATTGGATTTGTTAAGGAGATTTCTTTGA
GACCTGAATGCTGGATTGATTTTCCTTTACCACTCCAAAACGATTTTAGAATGACTGATGCTCAAAGAGAACATGTGTTGAATGTTGAACATTTTGTTCC
TAGTTTGGCACAACTTAGAAATAATCTTCGGAGTGAAATGGGGGATGGCCGATTTTGGATGGTTTATTTTATATTGTTGATTCCGAGATTGAATGAACAT
GATTTCGAGGTTCTATCGACTCCCCAGATAGTTGAAACAAGAAATTTACTTTTGCAGAAGCTGCAAAACAAGAGGAATGTTAAGGTGGAAAGCTCCAAGA
ATTCCAAGAGTGGTACACAAGGAGAGATTACAACATCTCAAGAAGAGATCACTGAGATTGCAGATGCTACTGAAGGCTTAAAAATTAATGAAGAGAATTC
TAGACAGTTTTCAAAAGAGAAAATTGACAATAGCACTTCAATGGATAACCATAAAAAGCTTGAAGATGAACAGGATGTGTCATTCAGTGATCTAGAGGAT
GATGATAGTGATTTTTCAATAAGATTATCAGCTTCTAGGAAGGCACGGAGCATTAGGGCTCCTTCACCCAGTGGATCCAGTGATTGGATCCAACTGAATG
AAGGTTCTGACACTCAGGGTGGTCCACCTAAGGCAAGACAGTCATTTTCTCGTGATAAAGATTCGGATGCTGAGTCTAGTGACTGGCATAAAGTTGATGA
ATATGATTAG
AA sequence
>Potri.018G125400.1 pacid=42801506 polypeptide=Potri.018G125400.1.p locus=Potri.018G125400 ID=Potri.018G125400.1.v4.1 annot-version=v4.1
MSWLFNSLQSNDPDSPPPHPPSPSVQDDLLVIGDSIGRQLRGVANFLAPPPPPPPSNTQAAKPQPFDSSSQSSQALLGIRNDLAEIGDSLKSGLSKFTSN
FLQFKDINSKNSDGDDVAGINEEVIGFVKEISLRPECWIDFPLPLQNDFRMTDAQREHVLNVEHFVPSLAQLRNNLRSEMGDGRFWMVYFILLIPRLNEH
DFEVLSTPQIVETRNLLLQKLQNKRNVKVESSKNSKSGTQGEITTSQEEITEIADATEGLKINEENSRQFSKEKIDNSTSMDNHKKLEDEQDVSFSDLED
DDSDFSIRLSASRKARSIRAPSPSGSSDWIQLNEGSDTQGGPPKARQSFSRDKDSDAESSDWHKVDEYD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G10950 BSD domain-containing protein ... Potri.018G125400
[exp]
0 1
AT2G46900 unknown protein Potri.014G109500
[exp]
3.74 0.7275
AT3G11900 ANT1 aromatic and neutral transport... Potri.016G064500
[exp]
6.32 0.6891 Pt-ANT1.2
AT5G28850 Calcium-binding EF-hand family... Potri.019G019500
[exp]
10.24 0.6555
AT1G31940 unknown protein Potri.001G135000
[exp]
12.84 0.6975
AT4G12850 FAR1_related Far-red impaired responsive (F... Potri.002G239400
[exp]
14.07 0.6607
AT5G22950 VPS24.1 SNF7 family protein (.1) Potri.004G215500
[exp]
16.00 0.6416
AT4G16070 Mono-/di-acylglycerol lipase, ... Potri.008G211200
[exp]
16.73 0.7073
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Potri.009G107600
[exp]
17.88 0.6854 2OGox7
AT1G17280 UBC34 ubiquitin-conjugating enzyme 3... Potri.001G162200
[exp]
26.45 0.5961
AT3G43220 Phosphoinositide phosphatase f... Potri.006G136400
[exp]
28.91 0.6194

Potri.018G125400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.