Plant FIBer expression Database

Potri.018G125500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25640 130 / 3e-31 SPOC domain / Transcription elongation factor S-II protein (.1)
AT5G11430 122 / 2e-28 SPOC domain / Transcription elongation factor S-II protein (.1)
AT5G25520 119 / 2e-27 SPOC domain / Transcription elongation factor S-II protein (.1.2)
AT3G29639 62 / 6e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T125307
[exp]
1338 / 0 AT2G25640 131 / 1e-31 SPOC domain / Transcription elongation factor S-II protein (.1)
Potri.006G246800
[exp]
142 / 6e-35 AT5G25520 536 / 1e-173 SPOC domain / Transcription elongation factor S-II protein (.1.2)
Potri.018G034500
[exp]
130 / 4e-31 AT5G25520 513 / 1e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008108
[exp]
136 / 7e-33 AT5G11430 559 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1)
Lus10013146
[exp]
134 / 3e-32 AT5G11430 550 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0616 SPOC PF07744 SPOC SPOC domain
Representative CDS sequence
>Potri.018G125500.2 pacid=42801214 polypeptide=Potri.018G125500.2.p locus=Potri.018G125500 ID=Potri.018G125500.2.v4.1 annot-version=v4.1
ATGTTGCAGCCTGTGGAATTTGAAGGGAGTAATGATAATAATGTGACTGGCTTGTTGAGAAAGAGAAAGCTGGAGCGTGGCACAGGATGTATTGAAAACA
ATAGGCCATTTCAGAGTAATGTTCAATGTGCTGGTGTTGGTTCTTTGGCTGTTGGCTGCCAAGATAATTTTGGAGAAAGGAATCGGGTTCATGGGGATGG
GGATGTGACAATTGGGAAGGAAACAGGAGTGGTTGTTGGAAAATCAGGACATTCTTTGGTGGAGATGAGTCCTAAAACCGGTGGTAGTTATGTTAATGTC
GTGGTTGAAGGTGGTCGGAGAAATGGATCACCGGTTGATGAAATTAAGTCACATGTTGGGAAGTTAGCTTCAATAGTTGCTCAGAAGCTCTGGGATGGAT
CCCTTCAGCTAAATTCCTCTGTAACTGTGTCCCTTGTTGCCTTCTTTCAAAGTGGTGAGAAGATGCCTGATCTCAAGTGGTCTGAATTTCTAGAAGTCAA
AGGCAAAGTTAGACTAGAGGCATTTGAAAAATATGTTCAAGATCTTCCTCGATCACGCAATCGAGGGTTGATGGTAATCTCACTTCGCTGTAAAGAAGGG
TCGTCTAAATCTGGACTGGCAGGCATGAAGGAGGTTGCAAAAGGATACAAGAAAGGGAAGAGGGTTGGGTTTGTACAGGTCTCTCAGGGTATTGATCTGT
ATGTGTGTCCTCGCAGTGATAGCATAATCACAATACTTGCTAAACATGGGTTCTTCAAGGGAATGGCTGCTGTTGAAGATAACCAAGACTCGTTGATTGG
CTGTGTTGTATGGCGAAGAAATCAAGCATCTTCAAGTTCTGTTCTTGAGAAATCTGAGAGAAAGCACGGTTCCTTGTCTGAACAGCCTCTCAAGTCACCT
TCAGACTCTTCAGTTGAAAGGGTAGATCATAAAGCTTTGTCTTGTTGCATCCAAGTTGGATCAAGAACAGATTGCACAACTCTTGATGGTGATGAAAATA
ACAATGTTGAGCACAAGGATATTGAGACTAAACAAGTACAGACTGAACTGCGTATCACTTCTTCCACCATCAATAATCTCTTGCTGACATCTACGATTCT
CAGCAATTCACCATCCATGTTGAACGGACTTCAAACTTCTTCAACTCATGACTCTGCCTCTTATTTGCCTGCTATGGGAAAGTTATTGCAAGTCGGGCCA
CTTGTTATGAATAACTCAGAAGAGAAACCTAAAACATCAGAACTTTGTAAACATGGTTCACAGTTGTCAACTGACATCGCCAAAAAGCCACTGCATGCCC
CATATGATGATGATCTTCCAGAATTTGACTTTGGAACTGCTTGTGGTATTTTACAAACTCCAACAAGCAAGCCGTTGCATGGGGTAATTGCTGACAACAA
ACTACCAGCTGAAGAACTTAAGAAAATCCTCGAGTCATTGCCCCAAATAACACCAACTGTACAGTCAATGCTGGTTTCCAATCAAAGGGAATTAAGAGAT
TTCAATCCTCCCAGGCTTCCTTTGGATACCCTTTTGAAGATGCCCGTGCAGAGGAAAATTTGTGTAGATGGTATGAACGTTCTCCCGCCCAATTTAGAAG
AAAAGCGTATGCCTGTTACCACTACTTCAGCTCGCCCCTTGAAAAATCTTTTTGATGATGATGATGAGATGCCTGAATGGAGCCCACCAGACTTTGAGCT
TCTCAGGCAACATGTTTCTGATACAACCAGGCCATCAACAACTTCTACTTACTCTAAAGTACGAAACTTGATTTTTGAAAGACTTCCTCCTGGCTGTCCT
AATAACCTGCTCTCTTCTTCACCAAGATCCGCCTATGCTCGGTTTACTCCCCAGGCAGGCATCAGTGCATCTCATCAGCTGATGAGTCATAATGGGAGAC
CAGCACAGCCCAGTCTCTCCAGTGAATATACACTGCATGGTCCAAATTCATCGACAGTATTCAATCCTAACCCTCTTCCTCGTTCAGGACCACCTCGTGA
CCCATTTGATGCCAAGCTTCCAGTCCACCATGGTGGTTGGAATCGTCGGAGGTGTTGA
AA sequence
>Potri.018G125500.2 pacid=42801214 polypeptide=Potri.018G125500.2.p locus=Potri.018G125500 ID=Potri.018G125500.2.v4.1 annot-version=v4.1
MLQPVEFEGSNDNNVTGLLRKRKLERGTGCIENNRPFQSNVQCAGVGSLAVGCQDNFGERNRVHGDGDVTIGKETGVVVGKSGHSLVEMSPKTGGSYVNV
VVEGGRRNGSPVDEIKSHVGKLASIVAQKLWDGSLQLNSSVTVSLVAFFQSGEKMPDLKWSEFLEVKGKVRLEAFEKYVQDLPRSRNRGLMVISLRCKEG
SSKSGLAGMKEVAKGYKKGKRVGFVQVSQGIDLYVCPRSDSIITILAKHGFFKGMAAVEDNQDSLIGCVVWRRNQASSSSVLEKSERKHGSLSEQPLKSP
SDSSVERVDHKALSCCIQVGSRTDCTTLDGDENNNVEHKDIETKQVQTELRITSSTINNLLLTSTILSNSPSMLNGLQTSSTHDSASYLPAMGKLLQVGP
LVMNNSEEKPKTSELCKHGSQLSTDIAKKPLHAPYDDDLPEFDFGTACGILQTPTSKPLHGVIADNKLPAEELKKILESLPQITPTVQSMLVSNQRELRD
FNPPRLPLDTLLKMPVQRKICVDGMNVLPPNLEEKRMPVTTTSARPLKNLFDDDDEMPEWSPPDFELLRQHVSDTTRPSTTSTYSKVRNLIFERLPPGCP
NNLLSSSPRSAYARFTPQAGISASHQLMSHNGRPAQPSLSSEYTLHGPNSSTVFNPNPLPRSGPPRDPFDAKLPVHHGGWNRRRC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25640 SPOC domain / Transcription el... Potri.018G125500
[exp]
0 1
AT4G34020 AtDJ1C DJ-1 homolog C, Class I glutam... Potri.009G100900
[exp]
4.35 0.8902
AT5G14370 CCT motif family protein (.1) Potri.001G339200
[exp]
5.29 0.8525
AT4G38360 LAZ1 LAZARUS 1, Protein of unknown ... Potri.004G204600
[exp]
8.77 0.8421
AT4G32551 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimeri... Potri.006G248100
[exp]
10.39 0.8519 LUG.1
AT1G75010 ARC3 ACCUMULATION AND REPLICATION O... Potri.010G099300
[exp]
12.64 0.8343
AT5G27730 Protein of unknown function (D... Potri.013G016900
[exp]
15.00 0.8628
AT3G19740 P-loop containing nucleoside t... Potri.005G093300
[exp]
15.29 0.8457
AT5G54080 HGO "homogentisate 1,2-dioxygenase... Potri.001G374100
[exp]
15.49 0.8112
AT1G69010 bHLH bHLH102, BIM2 BES1-interacting Myc-like prot... Potri.017G101700
[exp]
17.77 0.7973
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G154300
[exp]
21.16 0.8473

Potri.018G125500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.