Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35430 679 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G065600 [exp] 1441 / 0 AT5G35430 635 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G126780 [exp] 162 / 5e-41 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 159 / 5e-40 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027703 [exp] 1036 / 0 AT5G35430 726 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039983 [exp] 1035 / 0 AT5G35430 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.018G126100.1 pacid=42802157 polypeptide=Potri.018G126100.1.p locus=Potri.018G126100 ID=Potri.018G126100.1.v4.1 annot-version=v4.1 ATGGACGCACGAGATTCCACATCGAACCGAGACGTCTCATCGAGCCCCGGTGGCAGCGGCACCACCACCGGCGGTGGAGGAGGAGAAGACGACCCTATCC TTTCCGTCACCGCCGCTCTCGCCAAAGACGCTTGGTTTCACTTCAACTCTCGCCGGTTCAATGAGTGCCTCGAGGTTCTGTACCAGCTAAAGCAGAAAAA AGAAGACGATCCGAAGGTACTACATAATATTGCAATTGCGGAGTATTGTCGAGATGGTTATCCAGATCCAAAGAAGTTGCTTGAAATACTTAATAACATT GAGAGGAAAAGTGAAGAGCTTGCTCACGCCTCAGGAAAGCAGGTAGAGACTGTTAGCAATCCTGGGAACAAAGTTGTGTCAGGGTCTAAAGGAAGTGGTG CAACAGTGCACCAAGCATCTGCCACGAACAGCTTGTCTGTTGCTGACATGGATGAATTTGACCCAGCTGTAGCAAGGCTAAACATTGCAATCATTTGGTA CCATCTTCATGAATATTCAAAGGCATTATCGGTTCTAGAACCTTTGTATCACAATATCGAACCTATAGAGGAGAGAACTGCTCTTCATGTCTGCCTTTTG TTGCTAGATGTTGCACTTGCCTGCCAGGATGCATCTAAATCTGCTGATGTATTACTATATCTAGAAAAAGCGTTTGGCTTTGGTTCTGTGGGTCAAGGTG ATAATGGGAGCGCAGCACAGCAACAATCGACAAATCTAGTTGCAAAATCTTTCTCTGTTCCTAGTAGTTCATCAGGGATGGATGCTAATTCAGATTTAGC TCCTAGTGAGAATGCTTTGGAAAATTCTTTATCGAGAACTCTATCAGACGAGACACTTGAGTATGAATCAATGTTCTCACTCGACATAAGTGGGCAAAAC TTAGCAAGGCCTGTGGGTCTTTCATCTTCAAATGACCTTTCAAGGACCCCAATCGATAGGTCTTTTTCTCCTTCTGAAATGAAGCTTAAGTTGCACATTT ACAAGGTTCAATTTCTACTACTCACCAGGAATTTGAAACAAGCAAAGCGTGAAGTCAAGCTTGCTATCAACATTGCACGTGTGAGGGACTCGCCCATGGC TCTCCTCTTGAAATCTCAGCTTGAATATGCTCGTGGTAACTACCGTAAGGCCATTAAGCTGTTAATGGCATCAAGTAATCGGGCAGAGATGGGGATTTCA AGCATGTTCAACAACCTTGGGTGCATCTACTATCAGCTTGGGAAATACCATTCAGCAACTGTGCTCTTTTCCAAGGCACTGGCCAGTAGTTCATCTCTTT GGAAGGACAAGCCACGAAAGTTGTTAACTTTTTCACAGGATAAATCTCTCCTCATTGTATATAACTGTGGAGTGCAGCACTTGGCTTGTGGGAAACCCTT ACTGGCTGCTCGCTGTTTTGAAAAAGCAAGTTTAGTTTTCTACAACCAGCCTTTATTGTGGCTCCGGCTTGCTGAATGCTGCTTGATGGCTTTGGAGAAG GGACTTCTAAAAGCTGGTCGGGTTCCATCAGACAAGTCAGATGTTACTGTTCATGTTTTCGGCAAGGGAAAATGGAGGCATCTTGCAATTGAAAACGGTA TTTCAAGAAACGGATATGTGGATTCTGTTGAAAAGGAAGATTTGTTTTTGGGTAGTGATGGCCAACCAAAGCTCTCCATGTCCCTTGCTCGGCAGTGTCT CCGCAATGCTCTGCATTTACTGGATTACTCGGAATTAAATCATTTGAAGCCTGGTTTGCCTTCTAATATATCCTTGGATGAAAATGAACTGAGCGAAGAA GGATCTATGAAGAGTTCAAACCACAAGAATTTAACCGGCCTTGATTCCAAAGCATCTACTGTAGGCTTAGGTCAAGTTAATGCTAACGGGGATGCAAAAG AACAGAAGGGAGGGACAAGTCAGGAGATCATGCAGAACTCTATCTCTTTCCATGAAGATATTCGCAGGAGAGAAAATCAGATGATCAAGCAAGCGCTTCT CGCTAACTTAGCATATGTAGAGTTGGAATTGGAAAATCCTGAGAAGGCCTTGTCAAATGCAAGGTCTCTCTTGGAACTTCCAGTATGTTCGAGAATTTAT ATTTTTCTGGGTCATGTGTATGCAGCTGAGGCTCTCTGCTTGCTGGACAAGCCCAAGGAAGCTGCTGAGCATTTGTCAATTTATTTGTCTGGAGGAAATA ATGTGGGGTTGCCCTTTAGCCAGGATGACTATGTGCAATGGCGAGTGGAAAAAGCTTTTGATTATGAAGAGTTAAATGGAGGATCAATCACTGCAAAGAA TTCCTCCCCTGATGAATCACAAGGTATCGTGTTCCTCAATCCCGAAGAGGCATGCGGAACCCTTTACGCAAATTTTGCAGCCATGTATGCAGCACAGGGT GATCTTGAGCGAGCCCACCATTTCGTGACACAAGCTTTATCCCTCGTACCTAATCGTCCAGAAGCTACTCTGACAGCAGTTTACGTTGATCTTATGCTCG GTAACTCACAGGCAGCGGTTGCCAAGTTAAAACAATGTAGTCGGGTCAGATTTCTCCCAAGTGATGTACAATTGAATAAGTGTTGA
AA sequence Show only first row Show all	>Potri.018G126100.1 pacid=42802157 polypeptide=Potri.018G126100.1.p locus=Potri.018G126100 ID=Potri.018G126100.1.v4.1 annot-version=v4.1 MDARDSTSNRDVSSSPGGSGTTTGGGGGEDDPILSVTAALAKDAWFHFNSRRFNECLEVLYQLKQKKEDDPKVLHNIAIAEYCRDGYPDPKKLLEILNNI ERKSEELAHASGKQVETVSNPGNKVVSGSKGSGATVHQASATNSLSVADMDEFDPAVARLNIAIIWYHLHEYSKALSVLEPLYHNIEPIEERTALHVCLL LLDVALACQDASKSADVLLYLEKAFGFGSVGQGDNGSAAQQQSTNLVAKSFSVPSSSSGMDANSDLAPSENALENSLSRTLSDETLEYESMFSLDISGQN LARPVGLSSSNDLSRTPIDRSFSPSEMKLKLHIYKVQFLLLTRNLKQAKREVKLAINIARVRDSPMALLLKSQLEYARGNYRKAIKLLMASSNRAEMGIS SMFNNLGCIYYQLGKYHSATVLFSKALASSSSLWKDKPRKLLTFSQDKSLLIVYNCGVQHLACGKPLLAARCFEKASLVFYNQPLLWLRLAECCLMALEK GLLKAGRVPSDKSDVTVHVFGKGKWRHLAIENGISRNGYVDSVEKEDLFLGSDGQPKLSMSLARQCLRNALHLLDYSELNHLKPGLPSNISLDENELSEE GSMKSSNHKNLTGLDSKASTVGLGQVNANGDAKEQKGGTSQEIMQNSISFHEDIRRRENQMIKQALLANLAYVELELENPEKALSNARSLLELPVCSRIY IFLGHVYAAEALCLLDKPKEAAEHLSIYLSGGNNVGLPFSQDDYVQWRVEKAFDYEELNGGSITAKNSSPDESQGIVFLNPEEACGTLYANFAAMYAAQG DLERAHHFVTQALSLVPNRPEATLTAVYVDLMLGNSQAAVAKLKQCSRVRFLPSDVQLNKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35430			Tetratricopeptide repeat (TPR)...		Potri.018G126100 [exp]	0	1
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.015G060800 [exp]	4.47	0.5910
AT2G23150		ATNRAMP3, NRAMP...	natural resistance-associated ...		Potri.007G050700 [exp]	15.23	0.6267	Pt-NRAMP3.2
AT5G56350			Pyruvate kinase family protein...		Potri.003G223100 [exp]	24.00	0.5691
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Potri.002G216100 [exp]	25.88	0.5763
AT4G36720		HVA22K	HVA22-like protein K (.1)		Potri.007G029300 [exp]	26.38	0.5262
AT2G47960			unknown protein		Potri.004G040500 [exp]	33.00	0.5551
AT1G04900			Protein of unknown function (D...		Potri.001G314700 [exp]	48.68	0.5549
AT1G52565			unknown protein		Potri.006G069100 [exp]	58.99	0.5365
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.016G094300 [exp]	82.12	0.4743
AT4G01210			glycosyl transferase family 1 ...		Potri.014G092500 [exp]	100.69	0.4883

Compare expression of checked genes

Potri.018G126100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.