Plant FIBer expression Database

Potri.018G126300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017515
[exp]
1021 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12231 Rif1_N Rap1-interacting factor 1 N terminal
Representative CDS sequence
>Potri.018G126300.1 pacid=42800674 polypeptide=Potri.018G126300.1.p locus=Potri.018G126300 ID=Potri.018G126300.1.v4.1 annot-version=v4.1
ATGTCAAGTTTCTGTAATCAAATAGAAGAAATAAAATCCCTAATTTATTCTAACAAATCACTCGCTTACTCTACTCTTTCACACTTACAAGAACAATCAG
TAAATGATCCTTCATTACTACAAACCCTAGCTGACAATTCTCGAGATTTAGTCTCTTTGATCACAGTTGACATCTCAATTGATGATGAAGAAGTTGCTGC
ACAGGCTTTAAAGTGTTCGGGATTCATGATTTACCATCCTTCTCTTGTTTCTACTATTCCAGTTGATGATGCTAATTTGGTTTTGGAGGCATTGGCTAAA
GTAATTATGAGCACAAAGATAAAGTCGGTTTGTAATTTAGGAGTTTGGTGTATATCTATGCAACAATTTGAAGCATCAATTCTAGTTGGCTGTTTCAATT
CAGTGTTGCAGGCGGTTGTTCATGCTCTTGATAATCCGATTGGTTCTTTGTCTACGACATTTGAGGCTATGCAGGCTGTGATGAAGTTAGCAGCTCAGTT
AAGTGAGAGGATGAGAGAATCTTCACACATATGGGCTCCTCCAATATTTAGGAGACTTCTCAGCACTGATAAGAGAGAAAGGGATATTTCAGAAAGGTGT
TTACTGAAGATTAGGCCGACAATAATTCCTCCTCCCCCTGCTCTTTCCAAGGCACTTGCGGAAGATATGAAATTGAAATTACTTACTGTAATGAAGGATC
TTCTGAATCAGGGCTTGAAAATTCAAACGTTGCAAGCATGGGGATGGTTTATCCGCTTACAAGGATCTCATGCCATGAAGTATAGGCATTTAACTAATGA
CATGCTGAAAGTTCCAGAGAAAACATTCTCGGATCACAATCCACAAGTCCAGATTGCTTCGCTGGTTGCCTGGGAAGGTCTTGTTGATGCTTTCATTCAC
CCTGCACTCTTAACTTCTGAGACTAATGAACCCATTAAGAATGGTATTCAACAAGTGCGAACTTCTGGTGGGAGTAGTTGTCAAATTCAAGCAAGTGGTT
TTTCAAAAAGCATAAAGCTCATAATGACACCTCTAATTGGTATCATCTCGAGTAAATGTGATGTATCTGTTTACTCTTCATGCTTGAAGACATGGTGTTA
TCTGCTGCATAAGCTTGATATCTCTGTCAACCATCCATGGGTGATAGAACTGGTGTTGGATCCCATTTTTGGAGCTGTTTTTCGGTTTGGGCCTGATGTT
AAGACTTTCTGGTTGTGGAACCTGTGCCTAGATCTGCTTGACGATTTTATTTTAGCAAAATGCAGGAACCTAGACCATGAAACCAGTAGCCAGGTAAGCC
ATCATTCAACATCCAGCAAATGGTCATGGAAACTGCAACCCATTAAATGGTTGCCCTGGACTATTGGTCAGCTGGATTTCCTTGTAAAGATGATGGATAT
TATCATCAGCCATGCATCAATTGCAACAATCACCCCTGAAAATAGAAGTTCAGCATGTGATGCTGCCTTAAGGATATTTAGATCTTTTTTAAAAGGGGTC
CAAATGGATTTTAGAAGTTCCTCCACTAAATACAATGACATTATGTTGTGTTTGAACACATTATTAAGGTTCATAAAGAAGATATGTGAAGATGTAACTT
CAGAAGGTGGCAGGAGTAGTGAATTGCATCATACTTCCCTCCAATTTCTAGAGGCTGTTGTTCAGGACTTAGAACCTTCTATATTGGGATCCCCTCTTTA
CAAGGTGTCTTTAAACTTCACATGCATTCACCTGCAAATGGTTGACAACATTAGAAATGTAAAATATCTGGGTATCAGCTCTGTTGCTTACATGGATATG
GTTTCGCCATTGGTTTATCTAAGTGTACTCTATATCTGTGTGGTGATCCCATCAACTCCTGCCACTCGAGGGATGGAGCTACTTCTTCAGGGACTTCGCA
GATTTTTCAAAACCATACTTTTATTGTATGATCCTGTGGAAAATCTGTCTGTTGCTGTTGGTTTATTGTATAAACACATGGAGTTTAGGCACCTAGATAT
TTGGACAGCGATAGCAAAAGGTTTGGAAGATTTCTTCAATGGTCTAACTGTAAAGGATCTTTCACTTTTGAAAATGGACTCCAACAGGGATTTTCCTCGT
GCTGTATGCCACCTCTTATCCTACCCTTTTGTGGTTTGTTCTTGCTCTTGGCCAACCCAAAAGAAAGATAGTGGTTCCTTGAAAGAATCTCTTGTTTCAC
CAGAAAGAAAGCTTAAACTTCAACAAGTAGCTGAAGTGTGGAAATCACTGTATGGAGCTCTTTGTGCCTCGAAGTTTAATAAGTTCTCTGAAACAAGCAG
TTTAACTGAAGAGCTTTGTTCAATGTTAAATGGTTGTGTTGATCAAAACATCAGCATGCTTGACCATGGTACTGAGCAATATTTTCATCGTGATGATATT
GGCCTCACTTATTTATCTGGCACTGCTGTGACATGTGTCATGGAACAACAGATCCTAACTTTGGCAGCAAGTTCAGTTGGGAACAATGTGGAACATGCTC
GTGACCCTAAGACATTTAGTGGCATAAAAAATAGCTTGGAATTTTCTTCCAGATTCTTGAAGCTGTCATGGTCAATGATGGAAGCAGATCCTTCCACTAT
TCTCTTTGTAACTTCAAGGGTCTTTTCTGTGCTAGTATGTTTTGTCAGATGCCTTCACACCAAGCCATCTATTCTTTCATTTATTGAGACAATAAGTTGT
CCACTACTTCAGTGGCTGTCACATAGAGAAACACAGGAGGCAAGCACCAATGAACAACTTCACCACTTGTGGTCCGAAATCCTTAATTGCTTAAGGAGGT
GCCAACCACCAATAGTCTTTGATTCCTCTCTCCTAAAACTTCAGGCACCACTTCTTGAAAAAACTCTTGATCACCCAAAATCCACCATTTCAGAGCTTAC
CGTCACCTTTTGGAATTCAACATATGGTAAGCAGATCAAGTTAGATTACCCCGAGAGTTTACTTGACATCTTAGACAAGCTTTCAAGAAATAAAAGAATA
AACCTCCAAACAAAAAGTCTGCCATTCCTGGTAAAATGCCATTCAATATCAGAAGTAACTGCTCAGAGATCCAGGGTCACTGCAACAAACAGCAGGAACT
CTAAAAGAGTAGAGTTAGTGGAGGATACCGCGAATCAATTTGAGCCAGAAAATAGGTTGGGTTCAAGTTCAAAAAGAAAAAGGGTGGGACTTACCGACCA
CCAGAAGGAAGTGAGACGTGCACAGCAAGGAAGGGGAATGGATTGCAGTGGTCACGGTCCAGGGATCCGGACATACACTAGTGTTGATTTTTCACAAGGT
AATGAAGATTCACAAGAGAGTCAGGAAATCCGGGATCCTGAATCTATCTTGGAGCTGCTAAGAAGAACTGCTTAA
AA sequence
>Potri.018G126300.1 pacid=42800674 polypeptide=Potri.018G126300.1.p locus=Potri.018G126300 ID=Potri.018G126300.1.v4.1 annot-version=v4.1
MSSFCNQIEEIKSLIYSNKSLAYSTLSHLQEQSVNDPSLLQTLADNSRDLVSLITVDISIDDEEVAAQALKCSGFMIYHPSLVSTIPVDDANLVLEALAK
VIMSTKIKSVCNLGVWCISMQQFEASILVGCFNSVLQAVVHALDNPIGSLSTTFEAMQAVMKLAAQLSERMRESSHIWAPPIFRRLLSTDKRERDISERC
LLKIRPTIIPPPPALSKALAEDMKLKLLTVMKDLLNQGLKIQTLQAWGWFIRLQGSHAMKYRHLTNDMLKVPEKTFSDHNPQVQIASLVAWEGLVDAFIH
PALLTSETNEPIKNGIQQVRTSGGSSCQIQASGFSKSIKLIMTPLIGIISSKCDVSVYSSCLKTWCYLLHKLDISVNHPWVIELVLDPIFGAVFRFGPDV
KTFWLWNLCLDLLDDFILAKCRNLDHETSSQVSHHSTSSKWSWKLQPIKWLPWTIGQLDFLVKMMDIIISHASIATITPENRSSACDAALRIFRSFLKGV
QMDFRSSSTKYNDIMLCLNTLLRFIKKICEDVTSEGGRSSELHHTSLQFLEAVVQDLEPSILGSPLYKVSLNFTCIHLQMVDNIRNVKYLGISSVAYMDM
VSPLVYLSVLYICVVIPSTPATRGMELLLQGLRRFFKTILLLYDPVENLSVAVGLLYKHMEFRHLDIWTAIAKGLEDFFNGLTVKDLSLLKMDSNRDFPR
AVCHLLSYPFVVCSCSWPTQKKDSGSLKESLVSPERKLKLQQVAEVWKSLYGALCASKFNKFSETSSLTEELCSMLNGCVDQNISMLDHGTEQYFHRDDI
GLTYLSGTAVTCVMEQQILTLAASSVGNNVEHARDPKTFSGIKNSLEFSSRFLKLSWSMMEADPSTILFVTSRVFSVLVCFVRCLHTKPSILSFIETISC
PLLQWLSHRETQEASTNEQLHHLWSEILNCLRRCQPPIVFDSSLLKLQAPLLEKTLDHPKSTISELTVTFWNSTYGKQIKLDYPESLLDILDKLSRNKRI
NLQTKSLPFLVKCHSISEVTAQRSRVTATNSRNSKRVELVEDTANQFEPENRLGSSSKRKRVGLTDHQKEVRRAQQGRGMDCSGHGPGIRTYTSVDFSQG
NEDSQESQEIRDPESILELLRRTA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G126300
[exp]
0 1
AT5G13960 SDG33, KYP, SUV... SET DOMAIN PROTEIN 33, KRYPTON... Potri.014G143900
[exp]
1.00 0.8776
AT3G49000 RNA polymerase III subunit RPC... Potri.015G144900
[exp]
4.89 0.8421
AT4G09570 CPK4, ATCPK4 calcium-dependent protein kina... Potri.019G083200
[exp]
5.47 0.8236
AT4G21070 ATBRCA1 ARABIDOPSIS THALIANA BREAST CA... Potri.001G358100
[exp]
8.24 0.8283 Pt-ATBRCA1.1
AT3G19184 B3 AP2/B3-like transcriptional fa... Potri.009G103100
[exp]
16.43 0.8061
AT4G30860 SDG4, ASHR3 ASH1-related 3, SET domain gro... Potri.018G102100
[exp]
17.43 0.8130
AT5G52545 unknown protein Potri.004G079400
[exp]
19.28 0.8010
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Potri.002G121500
[exp]
19.49 0.8027 CYCA3.1
AT3G52770 ZPR3 LITTLE ZIPPER 3, protein bindi... Potri.006G083201
[exp]
20.24 0.7541
Potri.017G139650
[exp]
20.78 0.7590

Potri.018G126300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.