Plant FIBer expression Database

Potri.018G126500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G42170 796 / 0 BED zinc finger ;hAT family dimerisation domain (.1)
AT1G18560 127 / 2e-30 BED zinc finger ;hAT family dimerisation domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G126740
[exp]
1202 / 0 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Potri.004G126780
[exp]
1199 / 0 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Potri.018G126750
[exp]
1026 / 0 AT3G42170 857 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Potri.003G031700
[exp]
574 / 0 AT3G42170 581 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Potri.001G383800
[exp]
362 / 2e-115 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1)
Potri.011G104000
[exp]
360 / 1e-114 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1)
Potri.011G125951
[exp]
254 / 1e-73 AT3G42170 313 / 2e-95 BED zinc finger ;hAT family dimerisation domain (.1)
Potri.017G019466
[exp]
243 / 5e-69 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1)
Potri.012G059200
[exp]
134 / 2e-32 AT1G18560 953 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032337
[exp]
880 / 0 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Lus10005558
[exp]
309 / 7e-95 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1)
Lus10000359
[exp]
42 / 0.0001 ND 35 / 0.002
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF02892 zf-BED BED zinc finger
CL0361 PF05699 Dimer_Tnp_hAT hAT family C-terminal dimerisation region
CL0361 PF14372 DUF4413 Domain of unknown function (DUF4413)
Representative CDS sequence
>Potri.018G126500.2 pacid=42801824 polypeptide=Potri.018G126575.1.p locus=Potri.018G126500 ID=Potri.018G126500.2.v4.1 annot-version=v4.1
ATGGCAACCATTGAAGAGAAGAATCAGCTTATTAGTACTCCAGAAAACCAGATGGCAACACTTGAAGAGAAGAATCGGTTGATTACTCCTCCAGAATATC
AGATGGTGACTCTTGAAGAGAAGAATCAGCTGGTTGCTGCTCTAGAATACCAGATGACAACCCTTGAAGAGAATAGTCGCTCGACGCATGGTCCTGAAAC
ACAGCCTAGCAAGCGGAGGAAAAGGAAGTCCATGGTTTGGGAGCACTTCACCATAGAAACTCTAAGCTCCGACTGTAGAAGGGCATTCTGTAAGCAGTGC
AGGCAAAGCTTTGCTTACAGCATGGGTTCAAAAGTATCTGGTACCAGCCATCTTAAACGTCACATTGCCAAGGGAACTTGTCTAGCATTACTAAACAATC
AGGGGAATCGACAAACACCAGGTTCACCAACGATGAATGGAAATAGCAATATGTCTGATCCACCAAGACGTCGTTGCAGATCCCGAAACTCAGCCAGCAT
TTCATTTGATTTAGACCATTTCCGCCAAAAAATTGCCAGAATGATGATAATGCATGATTACCCTCTTCACATGGTCGAACATCCTGGATTTGTAAATTTT
GTCAAAAGTCTTGAACCGAGATATGACATGATGAGCTTTAATACAGTCCAAGGAGATTGTATCTCAGGTTACTTGAGGGAAAAGCAAAAAGTTATGAAGT
TCATTGAGTGTTTGCCTGGACGTGTTTGCCTTACATTGAACGTGTGGACATCTAGCCAAAGCTTAAGTTATGTGTTTATAACAGGACACTTCATTGATGG
TGACTGGAAGCCACAGAGGCGGATTCTCAATGTGTTGATGGAACCATATCCTAACTCGGATGCAGCTCTTAGCCATGCTGTTGCTAGTTGCCTATCTGAT
TGGAGTTTGGAAGGCAAGCTATTTTCTATCACTTTCAATCATCCAGTGGGTGAACCTGGACGTGAAAACCTCAGATCTCTTCTCTGTGTCAAAGATCCCC
TTATCATCAACGGTCAGTTACTATTTGGGAACTGCAGTGCTCATGCATTAAGCAGCTTTGCAAAAGATGTGCTGTGGGAAGGGCGAGAGATCATTAAGAA
AGTCCGTTACAGTGTAAAGTATGTGAAGACCACAGAATCCCATGAGCAAAAGTTCCGTGAGCTCAAGCAACAGCTTCAGGTCCCCAGTGAAAAAGGCCTG
TCTCTTGATAACCAAGCTCAATGGAACACGACATATCAGATGCTGGTTGCGGCTTCAGAGTTAAAGGAAGTGTTTTCTTGCTTAGATACTTCTGATCCTA
ATTACAAAGAGGCTCCATCCATGGAAGACTGGAAGCGGGTGGGCATTATGTGCACATACTTGAAACCTCTTTTTGATGCAGCCAACTTCCTTGCCTCTAG
AACAGGCCCAACCCAAAATACATTCTTTCACGAAGTCTGGAAGATGCATGATCTGTATCATTCTATTACAAGCCATGGGGATCCCTTTGTCATCGGTCTT
GCTGAAATAATGCAAGAAAAGATGGACAAATATTTGAAGGAGTGCATCCTGGCTTTGGCAATTGTTGTAGTCATGGATCCTCGATTTAAGATGAAGTTGA
TTGAGTTCAGTTTTCTGAGATTCTACGGTGAAGAAGCTGGCAAATATGTAAGGATCATTGATGGTGGGCTCCACAAGCTGTTTCTTGAATATGTGAGACT
TCCTCTCCCTCTTACTTCAGCTTATGCTGAAGATGGAAATTTTGAGAACAACACGAAGACAGAAGAAATTTCAGACAACGGGCTTACAGATTGTGATGTG
TATGTGGAGACTACTAGCCAAAATACGAAGTCGGAGCTGGAGCAGTATTTAGAAGAGTCTTTGCTGCCTCGCCACCAAGAGATGGATGTGTTGAAATGGT
GGGAAGAAAACAAGCTCAAATATCCAACTCTTTCAAAAATGGCTCGTGATATTTTGACCATGCAGGTATCTACTGCTGAACCTGACACTGTATTTGATAC
CGAGATCAAAGAACTGGATTCGTACCGGAGTTCTTTGAGACCTGAAACAGTGGAAGCCCTTGTGTGTGCTAAAGACTGGCTTCGGTACGGATCTGAAGCG
TCCACAGAAGTTTCTAATGCGCTTGCGGAAGTAAAGGGTCTTGGATCTTAG
AA sequence
>Potri.018G126500.2 pacid=42801824 polypeptide=Potri.018G126575.1.p locus=Potri.018G126500 ID=Potri.018G126500.2.v4.1 annot-version=v4.1
MATIEEKNQLISTPENQMATLEEKNRLITPPEYQMVTLEEKNQLVAALEYQMTTLEENSRSTHGPETQPSKRRKRKSMVWEHFTIETLSSDCRRAFCKQC
RQSFAYSMGSKVSGTSHLKRHIAKGTCLALLNNQGNRQTPGSPTMNGNSNMSDPPRRRCRSRNSASISFDLDHFRQKIARMMIMHDYPLHMVEHPGFVNF
VKSLEPRYDMMSFNTVQGDCISGYLREKQKVMKFIECLPGRVCLTLNVWTSSQSLSYVFITGHFIDGDWKPQRRILNVLMEPYPNSDAALSHAVASCLSD
WSLEGKLFSITFNHPVGEPGRENLRSLLCVKDPLIINGQLLFGNCSAHALSSFAKDVLWEGREIIKKVRYSVKYVKTTESHEQKFRELKQQLQVPSEKGL
SLDNQAQWNTTYQMLVAASELKEVFSCLDTSDPNYKEAPSMEDWKRVGIMCTYLKPLFDAANFLASRTGPTQNTFFHEVWKMHDLYHSITSHGDPFVIGL
AEIMQEKMDKYLKECILALAIVVVMDPRFKMKLIEFSFLRFYGEEAGKYVRIIDGGLHKLFLEYVRLPLPLTSAYAEDGNFENNTKTEEISDNGLTDCDV
YVETTSQNTKSELEQYLEESLLPRHQEMDVLKWWEENKLKYPTLSKMARDILTMQVSTAEPDTVFDTEIKELDSYRSSLRPETVEALVCAKDWLRYGSEA
STEVSNALAEVKGLGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G42170 BED zinc finger ;hAT family di... Potri.018G126500
[exp]
0 1
AT5G37830 OXP1 oxoprolinase 1 (.1) Potri.017G124400
[exp]
4.24 0.8386
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.001G355900
[exp]
13.63 0.8263
AT5G14950 GMII, ATGMII golgi alpha-mannosidase II (.1... Potri.008G117400
[exp]
14.07 0.8215
AT3G62720 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylo... Potri.010G025100
[exp]
18.16 0.7881
Potri.015G100500
[exp]
19.74 0.7595
AT1G23230 unknown protein Potri.010G108350
[exp]
24.24 0.8258
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.010G052150
[exp]
28.98 0.8217
AT4G10270 Wound-responsive family protei... Potri.013G147900
[exp]
38.72 0.7988
AT3G18360 VQ motif-containing protein (.... Potri.012G055900
[exp]
39.79 0.8049
AT1G16780 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase fa... Potri.008G003502
[exp]
49.07 0.8086

Potri.018G126500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.