Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42170 856 / 0 BED zinc finger ;hAT family dimerisation domain (.1) AT1G18560 124 / 2e-29 BED zinc finger ;hAT family dimerisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126780 [exp] 1067 / 0 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 1067 / 0 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126500 [exp] 1029 / 0 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.003G031700 [exp] 624 / 0 AT3G42170 581 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.001G383800 [exp] 376 / 2e-121 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G104000 [exp] 376 / 2e-121 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G125951 [exp] 286 / 6e-86 AT3G42170 313 / 2e-95 BED zinc finger ;hAT family dimerisation domain (.1) Potri.017G019466 [exp] 254 / 4e-73 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1) Potri.012G059200 [exp] 133 / 3e-32 AT1G18560 953 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032337 [exp] 989 / 0 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Lus10005558 [exp] 330 / 2e-103 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1) Lus10024839 [exp] 41 / 0.0006 ND 38 / 0.001 Lus10000359 [exp] 39 / 0.0008 ND 35 / 0.002
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0361 [poplar] [flax] PF05699 [poplar] [flax] Dimer_Tnp_hAT hAT family C-terminal dimerisation region CL0361 [poplar] [flax] PF14372 [poplar] [flax] DUF4413 Domain of unknown function (DUF4413)
Representative CDS sequence Show only first row Show all	>Potri.018G126750.1 pacid=42801050 polypeptide=Potri.018G126750.1.p locus=Potri.018G126750 ID=Potri.018G126750.1.v4.1 annot-version=v4.1 ATGGCAACCCCTGAAGAGAATAATCAGCTGGTGATTGCTCCTGAATCTACTCCAGAAACACAGCCTAATAAGCGGAGGAAGAAGAAGTCCATAGTCTGGG AACATTTCACGATAGAAAATGTAAGCCCTGGATGTAGAAGGGCGAGCTGTAACCAGTGCAAGCAAAGTTTTGCATACAGCACGGGATCTAAAGTAGCTGG TACCAGCCATCTCAAACGTCATATTGCCAAAGGAACTTGCCCAGCACTGCTACGCAATCAATCGCCATTTACCCCTGGGATGAATGGAAATGGCAGCATG TCCGATCCACCTAAACGTCGCTACAGGTCCCCGAGCTCTGCCTACATTTCCTTCGATTCAGACCGTTGCCGCCATGAAATTGCCAGAATGATGATAATGC ATGACTACCCTCTTCACATGGTAGAACATTCTGGATTCCTAGCCTTTGTCCAGAATCTTCAACCCAGGTTTGACATGGTGAGCTTCAATACCGTCCAAGG GGATTGTGTCGCCACTTACTTGAGAGAAAAGCAAAACATTATGAAGTTTGTTGAGGGCATGCCTGGGCGTGTCTGCCTTACATTAGACATGTGGACTTCT AGCCAAAGCTTGGGTTATGTGTTTATAACAGGACACTTTATTGATAGTGACTGGAAGCCTCAGAGTAGGATTCTCAATGTTGTGATGGAGCCATATCCTG ATTCAGACATGGCAATCAGCCATGCTGTTGCTTGTTGTCTTTCTGATTGGAGTTTGGAAGGCAAACTATTTTCTATCACTTTCAATCATCCAGTGGGTGA ACCTGGGCGTGAAAACCTCAGATCTCTTCTCTGTGTCAAAGATCCCCTTATCATCAATGGTCAGTTAATGATTGGGAACTGCAGTGCTCGCATTCTAAGT AGCATTGCAAAAGATGTCCTATGGGCAGGACGAGAGATCATCAAGAAAATCCGTGACAGCATAAAGTATGTGAAGACTTCAGAATCTCATGAGGAAAAGT TCCTTGAGCTCAAGCAACAGCTTCAAGTCCCCAGTGAAAAAAGCCTATCCCTTGACAATAGAACTCAATGGAACTCAACTTTTCAGATGTTGGTCGCTGC TTCCGAGTTAAAGGAAGTATTTTCTTGCTTGGATACTTCTGATCCTGATTACAAAGAAGCCCCTTCCATGGAAGACTGGAAGCAGATTGAGATTATATGC ACATACTTGAAACCTCTCTTTGATGCAGCCAATGTCCTTACGTCCAGAAATAATGCGACTCCAATAACATTCTTTCATGAACTATGGAAGATTCATGAGC TGTCTCGTGCAGTAGCAAGTGAGGATCCCTTTATCAGCAGTCTTGCTAAACTAATGCGAGAGAAGATTGACAAATATCTTAAAGATTGCAGCCTTGCTTT GGCAATTGCAGTAGTCATGGATCCTCGGTTTAAGATGAAGTTGGTTCAGTTCCGTTTTTCAAAAATCTTTGGTGACGAAGCTCCTTTGTATGTTAAGATT GTTGATGATGGCCTCCATGAGCTGTTTCTTGAATATGTTGCGCTTCCTCTACCCCTTACTCCAACTTATGCTGAAGATGGAAATTTTGAGAACATGAAGA CAGAAGATAACCAGGGAACTCTCCTTTCAGACCATGGACTTACAGATTTTGATATGTATATCATGGAGACTACTAGCCAAAATACGAGGTCAGAGCTGGA TCAGTATTTGGAGGAGTCTTTATTGCCTCGCTTGCAAGAGTTGGATTTGTTGGACTGGTGGAAAATGAACAAGCTCAAGTATCCGACCCTTTCAAAACTG GCCCGTGATATTTTGACCATCCAGGTATCTACTGCTGATCCTGACTCTGTATTCGATACCGAGATCAAAGAGCTGGATTCATACCGGAGTTCTTTGAGAC CTGAGACAGTGGAAGCCCTTGTGTGTGCTAAGGACTGGCTTCAGTATGGGTCTGCTGCACCTGCTGAAATTTCAAATGCGATTGTCAAAGTAGGGTCTTA G
AA sequence Show only first row Show all	>Potri.018G126750.1 pacid=42801050 polypeptide=Potri.018G126750.1.p locus=Potri.018G126750 ID=Potri.018G126750.1.v4.1 annot-version=v4.1 MATPEENNQLVIAPESTPETQPNKRRKKKSIVWEHFTIENVSPGCRRASCNQCKQSFAYSTGSKVAGTSHLKRHIAKGTCPALLRNQSPFTPGMNGNGSM SDPPKRRYRSPSSAYISFDSDRCRHEIARMMIMHDYPLHMVEHSGFLAFVQNLQPRFDMVSFNTVQGDCVATYLREKQNIMKFVEGMPGRVCLTLDMWTS SQSLGYVFITGHFIDSDWKPQSRILNVVMEPYPDSDMAISHAVACCLSDWSLEGKLFSITFNHPVGEPGRENLRSLLCVKDPLIINGQLMIGNCSARILS SIAKDVLWAGREIIKKIRDSIKYVKTSESHEEKFLELKQQLQVPSEKSLSLDNRTQWNSTFQMLVAASELKEVFSCLDTSDPDYKEAPSMEDWKQIEIIC TYLKPLFDAANVLTSRNNATPITFFHELWKIHELSRAVASEDPFISSLAKLMREKIDKYLKDCSLALAIAVVMDPRFKMKLVQFRFSKIFGDEAPLYVKI VDDGLHELFLEYVALPLPLTPTYAEDGNFENMKTEDNQGTLLSDHGLTDFDMYIMETTSQNTRSELDQYLEESLLPRLQELDLLDWWKMNKLKYPTLSKL ARDILTIQVSTADPDSVFDTEIKELDSYRSSLRPETVEALVCAKDWLQYGSAAPAEISNAIVKVGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42170			BED zinc finger ;hAT family di...		Potri.018G126750 [exp]	0	1
AT1G79220			Mitochondrial transcription te...		Potri.007G069100 [exp]	4.58	0.8518
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	11.31	0.8475
AT1G31660			unknown protein		Potri.001G394000 [exp]	14.96	0.7824
AT5G01260			Carbohydrate-binding-like fold...		Potri.006G099200 [exp]	15.65	0.8205
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Potri.001G403200 [exp]	17.02	0.8114
AT5G62270			unknown protein		Potri.007G133900 [exp]	17.29	0.7879
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.002G226000 [exp]	18.65	0.8282
AT1G20230			Pentatricopeptide repeat (PPR)...		Potri.002G021300 [exp]	20.49	0.8294
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Potri.003G076500 [exp]	21.00	0.8352
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	25.29	0.8292

Compare expression of checked genes

Potri.018G126750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.