Plant FIBer expression Database

Potri.018G127200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G32440 287 / 1e-97 Ubiquitin system component Cue protein (.1.2.3)
AT1G80040 181 / 5e-56 unknown protein
AT5G02510 110 / 2e-29 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G066000
[exp]
440 / 2e-157 AT5G32440 241 / 3e-79 Ubiquitin system component Cue protein (.1.2.3)
Potri.005G121100
[exp]
149 / 2e-44 AT1G80040 130 / 2e-37 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039988
[exp]
361 / 3e-126 AT5G32440 272 / 1e-91 Ubiquitin system component Cue protein (.1.2.3)
Lus10027700
[exp]
353 / 9e-123 AT5G32440 262 / 2e-87 Ubiquitin system component Cue protein (.1.2.3)
Lus10027699
[exp]
342 / 2e-118 AT5G32440 253 / 8e-84 Ubiquitin system component Cue protein (.1.2.3)
Lus10039987
[exp]
337 / 1e-116 AT5G32440 255 / 1e-84 Ubiquitin system component Cue protein (.1.2.3)
Lus10024410
[exp]
155 / 9e-46 AT5G02510 149 / 8e-45 unknown protein
Lus10025332
[exp]
151 / 3e-44 AT5G02510 152 / 4e-46 unknown protein
Lus10014293
[exp]
135 / 2e-38 AT1G80040 129 / 1e-36 unknown protein
Lus10026000
[exp]
134 / 6e-38 AT1G80040 121 / 1e-33 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0214 UBA PF02845 CUE CUE domain
Representative CDS sequence
>Potri.018G127200.1 pacid=42801566 polypeptide=Potri.018G127200.1.p locus=Potri.018G127200 ID=Potri.018G127200.1.v4.1 annot-version=v4.1
ATGTCTGCAATAGTGTGCGGGAAGAGATCTTTCTTTGAAGAACTGACTGTTACTAGCCCACCTGTGTCGAAAAGAATCCGTTGTTCTTCTTCCTCTCCTG
TTCGTTTTTCTCCTCCTAGATCGAATACTCTTGCTTCCAATCCGCCTTCGTTTAATTTCGGTTCTTCTTCTTCATCTTCTTCGACTTTGATCGAACAGCT
CGCCGCCATTTTCCCTGATATGGACAAGCAGCTTATAGAGAAAGTGCTTGAAGAATGTGGTGATGATTTGGATTCAGCTATCAGAAGTTTGAATGATCTT
CGTTTAGGATCTGCCGAAAACTTCAGCGCAGCTGCAGATAAGTCTGATGTGATTGATGAGTCTAATGTTCCAGCACAAGGGGTAGCAACAACTGGTGCTG
AGGCTCCTCCTACTGAGGATCTGTCAGCGTCAGCACACCTCTCATTGGATGGTGCGGAGTGGGTGGAGCTCTTTGTTAGGGAAATGATGAGTGCCTCCAA
TATTGATGACGCCAGAGCACGTGCTTCTCGGGCACTGGAAGTTCTGGAGAAGTCCATCTGTGCACGTGCAGGAGCAGAGGCAGTTAAAAACTTTCACCAG
GAACACATGATTTTGAAGGAACAAGTGCAAGCATTGATCCAGGAAAATACGATTCTCAAGCGAGCAGTATCTATTCAGCATGAGCGTCAAAAAGAGTATG
AAGAGAGGAACCAGGAGATGCAGCAGCTGAAGCAATTGGTGTCCCAATACCAGGACCAGTTGAGGACCTTGGAGGTAAACAACTATGCGTTGACATTGCA
CCTGAAGCAGGCTCAACAAAGCAGCTCAATCCCAGGACGTTTCCACCCTGATGTCTTCTAA
AA sequence
>Potri.018G127200.1 pacid=42801566 polypeptide=Potri.018G127200.1.p locus=Potri.018G127200 ID=Potri.018G127200.1.v4.1 annot-version=v4.1
MSAIVCGKRSFFEELTVTSPPVSKRIRCSSSSPVRFSPPRSNTLASNPPSFNFGSSSSSSSTLIEQLAAIFPDMDKQLIEKVLEECGDDLDSAIRSLNDL
RLGSAENFSAAADKSDVIDESNVPAQGVATTGAEAPPTEDLSASAHLSLDGAEWVELFVREMMSASNIDDARARASRALEVLEKSICARAGAEAVKNFHQ
EHMILKEQVQALIQENTILKRAVSIQHERQKEYEERNQEMQQLKQLVSQYQDQLRTLEVNNYALTLHLKQAQQSSSIPGRFHPDVF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G32440 Ubiquitin system component Cue... Potri.018G127200
[exp]
0 1
AT2G16460 Protein of unknown function (D... Potri.007G016300
[exp]
1.73 0.7232
AT1G03905 ABCI19 ATP-binding cassette I19, P-lo... Potri.002G036300
[exp]
5.65 0.7226 POP.2
AT1G68070 Zinc finger, C3HC4 type (RING ... Potri.008G134900
[exp]
5.91 0.7035
AT5G36230 ARM repeat superfamily protein... Potri.019G053600
[exp]
6.24 0.8084
AT4G19003 VPS25 E2F/DP family winged-helix DNA... Potri.001G135700
[exp]
9.21 0.6547
AT3G06760 Drought-responsive family prot... Potri.011G057200
[exp]
12.96 0.6913
AT2G21600 ATRER1B endoplasmatic reticulum retrie... Potri.005G228900
[exp]
13.49 0.6932 RER1.4
AT1G55340 Protein of unknown function (D... Potri.003G221000
[exp]
17.14 0.6421
AT2G22640 ATBRK1, BRK1, H... BRICK1, putative (.1) Potri.014G010000
[exp]
23.32 0.6285
AT1G02130 ARA5, AtRABD2a,... ARABIDOPSIS THALIANA RAB D2A, ... Potri.003G081800
[exp]
24.24 0.6696 RAB1.6

Potri.018G127200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.