Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) AT5G15080 497 / 2e-174 Protein kinase superfamily protein (.1) AT3G28690 488 / 4e-172 Protein kinase superfamily protein (.1.2.3) AT2G28930 439 / 6e-153 APK1B protein kinase 1B (.1.2.3) AT5G02290 436 / 5e-152 NAK Protein kinase superfamily protein (.1.2) AT5G01020 436 / 1e-151 Protein kinase superfamily protein (.1) AT1G07570 434 / 1e-150 APK1A Protein kinase superfamily protein (.1.2.3) AT2G39660 415 / 2e-143 BIK1 botrytis-induced kinase1 (.1) AT2G02800 413 / 3e-142 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 410 / 9e-142 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066100 [exp] 834 / 0 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 502 / 1e-176 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 499 / 2e-175 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 489 / 9e-172 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 488 / 6e-171 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 488 / 6e-171 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.001G240400 [exp] 452 / 5e-158 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 447 / 3e-156 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G143200 [exp] 438 / 4e-152 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006643 [exp] 715 / 0 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10038087 [exp] 709 / 0 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10005255 [exp] 503 / 1e-176 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 503 / 2e-176 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10030796 [exp] 481 / 4e-168 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10024391 [exp] 444 / 7e-155 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 444 / 8e-155 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 440 / 8e-154 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000954 [exp] 426 / 1e-147 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10002697 [exp] 425 / 2e-147 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G127300.1 pacid=42801534 polypeptide=Potri.018G127300.1.p locus=Potri.018G127300 ID=Potri.018G127300.1.v4.1 annot-version=v4.1 ATGGAGAGCAAGTGCGGTTGCTGGCCTGTCTTAAAACGTGGGGTTAGAGGTTCTCGCAAGTCCTCTGCCTCTAGAGATTCTGCTAACTCTATCCCTCGTA CTAGTCTTGTTTATGATGCAGCTACTGAAACAAGATATCTAAATGCAAGCAATCGAGAGTTATGTGCTCCTAATGAAGCTCAACTATCCTATGACAATCC TCATCCACCACCCACAGATACCAAATCTCTATGCCAGTCACTTCAGTTTACTTTTCAAGAACTAAAATCAGCAACCGGGAATTTTAGGCCTGATAGCATT CTTGGAGAGGGCGGATTTGGATACGTGTTTAAAGGATGGATAGAGGAGCATGGGACAGCACCAGCAAAACCTGGGTCAGGAATCACAGTTGCGGTGAAGA GTTTAAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAGCTTCATCATCCTAATCTTGTTAAGCTTATTGGTTA CTGCATTGAGGATGATCAGCGGCTTCTTGTTTATGAGTTTATGACACGAGGAAGTCTTGAAAATCATCTTTTTAGAAGGACAATACCTCTTCCATGGTCC AACAGGATTAAGATTGCACTTGGAGCAGCAAAAGGGTTGGCCTTTCTCCATGGTGGTCCTGAACCAGTTATTTACAGGGATTTTAAGACATCAAACATTT TGCTTGATTCGGAATACAATGCAAAGCTTTCAGATTTTGGTCTAGCAAAAGCTGGGCCTCAAGGGGACAAAACTCATGTTTCTACCAGGGTTGTTGGGAC ATATGGCTATGCTGCTCCAGAGTATGTGATGACAGGACACTTGACATCTAAGAGTGATGTTTACAGCTTCGGAGTTGTGCTACTTGAGATTCTGACAGGT AGAAGATCAATGGACAAGAAGCGACCTAGTGGTGAACAGAATCTTGTTACATGGGCACGGCCTTATTTAGCTGACAAGAGAAAGATGTACCAGCTAGTGG ATCCCAGGTTGGAGCTAAATTACTCCCTTAAAGGGGTCCAGAAAGTTTCTCAGTTGGCTTTCAGCTGCCTCAGTAGGGATTCATATTCCCGCCCCACAAT GGATGAAGTTGTGAAAGTTCTCACTCCATTGCAAGATCTTAACGACCTTGCCATTTTATCATACCACTCTCGTTTGTCTCAACAAGGGAAGCGCAAGAAG AAGAGCGAAGGAACACAAAAGCATACGAATGTATCATCCAAAAGCATCAGAGATTCTCCCTTGAATACAGGCAAGCAGCGTTTTAGATAA
AA sequence Show only first row Show all	>Potri.018G127300.1 pacid=42801534 polypeptide=Potri.018G127300.1.p locus=Potri.018G127300 ID=Potri.018G127300.1.v4.1 annot-version=v4.1 MESKCGCWPVLKRGVRGSRKSSASRDSANSIPRTSLVYDAATETRYLNASNRELCAPNEAQLSYDNPHPPPTDTKSLCQSLQFTFQELKSATGNFRPDSI LGEGGFGYVFKGWIEEHGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWS NRIKIALGAAKGLAFLHGGPEPVIYRDFKTSNILLDSEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEILTG RRSMDKKRPSGEQNLVTWARPYLADKRKMYQLVDPRLELNYSLKGVQKVSQLAFSCLSRDSYSRPTMDEVVKVLTPLQDLNDLAILSYHSRLSQQGKRKK KSEGTQKHTNVSSKSIRDSPLNTGKQRFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01300			Protein kinase superfamily pro...		Potri.018G127300 [exp]	0	1
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.012G123900 [exp]	2.44	0.8900
AT1G32930			Galactosyltransferase family p...		Potri.001G450200 [exp]	11.74	0.8653
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.001G292900 [exp]	13.49	0.8554
AT2G35880			TPX2 (targeting protein for Xk...		Potri.016G066600 [exp]	15.29	0.8652
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.006G101300 [exp]	16.73	0.8612
AT1G27850			unknown protein		Potri.010G056200 [exp]	18.33	0.8641
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Potri.001G172800 [exp]	20.00	0.8533
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.017G134900 [exp]	21.16	0.8449	TMK1.1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120900 [exp]	22.97	0.8568	Pt-FLA14.3
AT3G25855			Copper transport protein famil...		Potri.008G119200 [exp]	23.55	0.7801

Compare expression of checked genes

Potri.018G127300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.