Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52580 917 / 0 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 146 / 6e-38 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 142 / 1e-36 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 138 / 3e-35 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 134 / 6e-34 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G41940 135 / 2e-33 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G49350 130 / 9e-32 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 127 / 7e-31 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 124 / 9e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G59570 123 / 4e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066300 [exp] 1191 / 0 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.005G227400 [exp] 144 / 3e-37 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 135 / 2e-33 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 130 / 2e-32 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.012G024500 [exp] 131 / 3e-32 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G419100 [exp] 130 / 3e-32 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 130 / 1e-31 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 130 / 1e-31 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.017G023200 [exp] 122 / 1e-28 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006646 [exp] 985 / 0 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 980 / 0 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 903 / 0 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10027697 [exp] 526 / 0 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10027698 [exp] 327 / 1e-106 AT5G52580 299 / 3e-96 RabGAP/TBC domain-containing protein (.1.2) Lus10022905 [exp] 137 / 1e-34 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 138 / 2e-34 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10043064 [exp] 137 / 4e-34 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10011159 [exp] 136 / 4e-34 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10024920 [exp] 135 / 4e-34 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain CL0266 [poplar] [flax] PH PF12068 [poplar] [flax] PH_RBD Rab-binding domain (RBD)
Representative CDS sequence Show only first row Show all	>Potri.018G127500.1 pacid=42801852 polypeptide=Potri.018G127500.1.p locus=Potri.018G127500 ID=Potri.018G127500.1.v4.1 annot-version=v4.1 ATGCAAGAACCGGACCTTCACGATTTATCCGACGACGCCGATTACGCCGCCTCTCTTCAACAAGGATCGGCGAGCATGATGATGACGCGGAGCGACAGCG GAAAGAGTACCTCGTCGAGCGTGCCGGAAGGCGCAGAAGTTGTATATCTGAAAGATAACGTCACAATTCATCCTACTCAGTATGCGTCCGAGAGAATCAG TGGTCGACTGAAGCTTATCAAGCAAGGCTCTTCTCTCTTTATGACGTGGATTCCGTACAAAGGGCAGATTACGAATGCGAGCTTGTCAGAGAGAGATAGG AGTCTTTATACCATAAGGGCTGTGCCTTTTACGGATGTGAGGTCCATTCGTCGATATACTCGGACGCTTGGGTGGCAGTACATAATAGTTGTTTTGTCAT CAGGACTCGCATTTCCTTCACTTTACTTCTACAATGGAGGAGTCAAAGAGTTCCTTGCTACAATAAAGCAACATGTTTTTATTGCGAGGTCATTAGAAGA TGCAAATGTATTCCTGGTGAATGATTTTCAAAATCCCTTTCAGAGAACTTTGTCCTCTTTAGAGTTGCCTGTTTCTATTGCAAGTAGGCCATCTGCATCT GTTTCAGATGGTGGTGAATATTCATCTTATGAACTCCAAGGGAGGATTGATGGCAGCATCCATGAAGACATTCCTAGGCCTTCTCAAAACCACGGGAGGC AGAAGCACAAGAGTCATGATCCTGCTCGAGATCTAACAATCCAAGTACTGGAAAAATTTTCTCTTGTGACTAAATTTGCTCGGGATACAAGTTCACAACT GTTTCGTGAAAGTAATAGCAATGGCTATGGTGCTATCGAGAGGAAAAGTTCTAGCCACTCCCCCCCTGATATCCCCCATGAGGCATCAATGGATGCAAAG GTAGCTCCTGGGGAAGGTCCTGTTCCCTCAGATCCTCTGGAGTTCGATAAAATGACACTTGTATGGGGAAAACCAAGACAGCCTCCCTTGGGGTCTGAAG AGTGGGAAATTTTCTTGGATTCTGAAGGGCGAATCATAGATTCAAAAGCCTTAAAAAAGAGAATATTCTACGGGGGAGTTGAGCACTCAACATGCAAAGA GGTCTGGCCACTTCTGTTGGGATATCATGCTTATGATTCAACATACGCTGAGAGGGAATACCTCAAGTCAACCAAAAAGTCAGAGTATGAGATAGTAAAA CAACAATGGCAGAGTATCTCTACTGAACAGGCAAAGAGATTTACAAAATTTAGGGAAAGGAAGGGCCGTATAGACAAAGATGTGGTGAGGACTGATAGAA CGTTGTCTTTCTATGAGGGGGATGATAATGCAAATGTGAATATCTTACGTGATATTCTTTTGACATATTCCTTTTATAACTTTGATCTTGGTTACTGCCA GGGTATGAGCGATTTACTATCCCCAATTTTATTTGTGATGGAGGACGAATCAGAAGCATTTTGGTGTTTTGTGGCACTGATGGCACGTCTTGGACCCAAT TTTAATCGTGACCAAAATGGCATGCACTCTCAGCTTTTTGCATTATCTAAGCTGGTGGAGTTGCTTGATAGCCCATTACATAACTATTTCAAGCAGAATG ATTGCTTGAATTACTTCTTTTGTTTCCGCTGGGTTCTAATACAATTTAAAAGGGAATTTGAATACAAGAAAACAATGCGATTGTGGGAGGTGTTGTGGAC CCATTATTTGTCTGAGCACCTGCATCTGTATGTATGTGTTGCGATCTTGAAGCGGTACCGCAACAAGATTATGGGGGAGCACATGGACTTCGACACCCTC TTGAAATTCACCAATGAGCTGAGTGGCCATATCGACCTTGATTCAATTCTTAGAGATGCAGAGGCTCTGTGCATATGTGCTGGTGAGAATGGTGCTGCTT GCATCCCCCCAGGGACACCACCTTCGCTGCCTATCGAGAATGAGAATGCTTTATTGTATACTCAAGAGGAGGATGAAGTACTGTAA
AA sequence Show only first row Show all	>Potri.018G127500.1 pacid=42801852 polypeptide=Potri.018G127500.1.p locus=Potri.018G127500 ID=Potri.018G127500.1.v4.1 annot-version=v4.1 MQEPDLHDLSDDADYAASLQQGSASMMMTRSDSGKSTSSSVPEGAEVVYLKDNVTIHPTQYASERISGRLKLIKQGSSLFMTWIPYKGQITNASLSERDR SLYTIRAVPFTDVRSIRRYTRTLGWQYIIVVLSSGLAFPSLYFYNGGVKEFLATIKQHVFIARSLEDANVFLVNDFQNPFQRTLSSLELPVSIASRPSAS VSDGGEYSSYELQGRIDGSIHEDIPRPSQNHGRQKHKSHDPARDLTIQVLEKFSLVTKFARDTSSQLFRESNSNGYGAIERKSSSHSPPDIPHEASMDAK VAPGEGPVPSDPLEFDKMTLVWGKPRQPPLGSEEWEIFLDSEGRIIDSKALKKRIFYGGVEHSTCKEVWPLLLGYHAYDSTYAEREYLKSTKKSEYEIVK QQWQSISTEQAKRFTKFRERKGRIDKDVVRTDRTLSFYEGDDNANVNILRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESEAFWCFVALMARLGPN FNRDQNGMHSQLFALSKLVELLDSPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYKKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEHMDFDTL LKFTNELSGHIDLDSILRDAEALCICAGENGAACIPPGTPPSLPIENENALLYTQEEDEVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52580			RabGAP/TBC domain-containing p...		Potri.018G127500 [exp]	0	1
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.004G225800 [exp]	2.00	0.7622
AT5G01990			Auxin efflux carrier family pr...		Potri.016G141700 [exp]	7.74	0.7408
AT4G21215			unknown protein		Potri.011G026900 [exp]	12.24	0.7017
AT5G23750			Remorin family protein (.1.2)		Potri.012G140800 [exp]	12.36	0.7100
AT5G23490			unknown protein		Potri.004G133700 [exp]	13.71	0.7041
AT5G35180			Protein of unknown function (D...		Potri.018G113100 [exp]	20.49	0.6330
AT4G30630			unknown protein		Potri.006G183000 [exp]	28.86	0.6314
AT1G48790		AMSH1	associated molecule with the S...		Potri.015G045800 [exp]	30.00	0.6155
AT4G26450		WIP1	unknown protein		Potri.001G472600 [exp]	31.84	0.6879
AT5G63520			unknown protein		Potri.015G098700 [exp]	34.19	0.6827

Compare expression of checked genes

Potri.018G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.