Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13290 530 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) AT1G12990 464 / 7e-164 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G67880 452 / 1e-159 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G27540 450 / 1e-158 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT5G14480 442 / 1e-155 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G01620 416 / 5e-145 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G26445 78 / 1e-17 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066700 [exp] 664 / 0 AT2G13290 526 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G343600 [exp] 460 / 2e-162 AT3G27540 627 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.010G046900 [exp] 450 / 2e-158 AT1G12990 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.008G186000 [exp] 450 / 2e-158 AT1G12990 691 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038093 [exp] 581 / 0 AT2G13290 533 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019400 [exp] 578 / 0 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10043257 [exp] 578 / 0 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10006474 [exp] 443 / 1e-155 AT1G12990 657 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006475 [exp] 442 / 6e-155 AT1G12990 654 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10032088 [exp] 435 / 1e-152 AT3G27540 676 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10035231 [exp] 435 / 1e-152 AT3G27540 672 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10003666 [exp] 431 / 4e-151 AT3G27540 670 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10022281 [exp] 428 / 1e-149 AT3G27540 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04724 [poplar] [flax] Glyco_transf_17 Glycosyltransferase family 17
Representative CDS sequence Show only first row Show all	>Potri.018G127900.2 pacid=42800382 polypeptide=Potri.018G127900.2.p locus=Potri.018G127900 ID=Potri.018G127900.2.v4.1 annot-version=v4.1 ATGGCCCCTAGACTCCTTCGCTTAGCCTACAGAAGAGTAACCTTCAAGGTTGTTTTCTTCATACTGCTGATACTTGTGCCAATTTGTGTGATTGGAATCC TCACACATGCCCAGCATGTCTCCTACTTTTTACGTCCACTTTGGGACAACCCCCCTCCTCCCTTTAAACACCTACCTCACTATTATGCAGAGAATGTCTC AATGGAACATCTTTGCCACCTACATGGTTGGTCCCTACGATCTGAGCCTCGCCGTGTATTTGATGCCATCATCTTTAGCAATGAGCTAGACGTTCTTGAG ATCAGATGGCACGAGCTTTATCCTTACATCACTAAATTTGTAATCCTCGAATCGAATACCACTTTCACTGGCATCCCCAAGCCTCTCTTCTTTGACTCAA ACCGGTCTAGATTTGCCTTTGCGAAGGAGAAGATTGTCCATGGTGTATTTTCAGGCCGAATTGCTGCCCGTGGAAAAAATGAAGACCCTTTTGTACTTGA GTTTGAGCAGCGGAAAGCTATGAGTGGATTGCTCCGCAGTTCAGGAATTTCCTACGGTGACTTGATCATTATGTCAGATGCAGATGAGATTCCAAGCCCA CACACATTGAAACTACTGCAGTGGTGTGATGAAATTCCACATGCCATGCACCTTGAGCTCAAGCACTACATGTACTCATTTGAGTTTCCTGTAGATTACA GTAGCTGGCGGGCCACAATCCAGATTTTTGGCCCTCGCACCGGTTACCGGCATTCACGCCAAACTGACCTTATTCTCTCTGATTCTGGGTGGCACTGTAG TTTTTGCTTTCGCCGACTTCAGGAATTTGTGTTTAAGATGACTGCATATAGTCATGCAGATAGAGTTAGGAGGAATGAATTTTTGAACTACTCTAGAATT CAGAAAATCATTTGCAGTGGAGATGATCTCTTTGATATGCTACCTGAGGAGCACACCTTTCAGGAGCTGATTAAGAAGATGGGACCAATACCCCATTCAG CTTCTGCGGTCCACCTCCCGTCATATTTGATAGAGAATGCGGATAAGTTTAGGTTTCTTCTTCCTGGGAATTGTTTACGAACATTGGAATGA
AA sequence Show only first row Show all	>Potri.018G127900.2 pacid=42800382 polypeptide=Potri.018G127900.2.p locus=Potri.018G127900 ID=Potri.018G127900.2.v4.1 annot-version=v4.1 MAPRLLRLAYRRVTFKVVFFILLILVPICVIGILTHAQHVSYFLRPLWDNPPPPFKHLPHYYAENVSMEHLCHLHGWSLRSEPRRVFDAIIFSNELDVLE IRWHELYPYITKFVILESNTTFTGIPKPLFFDSNRSRFAFAKEKIVHGVFSGRIAARGKNEDPFVLEFEQRKAMSGLLRSSGISYGDLIIMSDADEIPSP HTLKLLQWCDEIPHAMHLELKHYMYSFEFPVDYSSWRATIQIFGPRTGYRHSRQTDLILSDSGWHCSFCFRRLQEFVFKMTAYSHADRVRRNEFLNYSRI QKIICSGDDLFDMLPEEHTFQELIKKMGPIPHSASAVHLPSYLIENADKFRFLLPGNCLRTLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	0	1
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	1.41	0.9327	HMGB906,ATHMG.1
AT3G60800			DHHC-type zinc finger family p...		Potri.001G117100 [exp]	2.00	0.9210
AT5G15080			Protein kinase superfamily pro...		Potri.010G033800 [exp]	2.00	0.9174
AT1G77360			Tetratricopeptide repeat (TPR)...		Potri.003G045800 [exp]	2.44	0.9177
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.018G017300 [exp]	3.87	0.9087
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.011G086500 [exp]	4.89	0.9020	FIM1.1
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	6.48	0.9054
AT4G37020			unknown protein		Potri.007G043200 [exp]	7.34	0.9002
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.004G130400 [exp]	7.48	0.8930
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.012G096700 [exp]	7.74	0.8909

Compare expression of checked genes

Potri.018G127900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.