Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15880 1649 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT1G15750 1590 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT1G80490 1590 / 0 TPR1 TOPLESS-related 1 (.1.2) AT3G16830 1332 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1316 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 251 / 2e-70 transducin family protein / WD-40 repeat family protein (.1) AT2G43770 60 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 60 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 56 / 9e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 55 / 3e-07 transducin family protein / WD-40 repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066800 [exp] 2025 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.003G030000 [exp] 1650 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1607 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.013G081300 [exp] 1410 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.005G021700 [exp] 1361 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1355 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.018G023900 [exp] 1316 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.006G257900 [exp] 1315 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023800 [exp] 1115 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043258 [exp] 1868 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10011481 [exp] 1618 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 1587 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 1585 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10029876 [exp] 1326 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 1321 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10019401 [exp] 1139 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10006650 [exp] 1100 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 979 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001951 [exp] 687 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.018G128000.1 pacid=42800664 polypeptide=Potri.018G128000.1.p locus=Potri.018G128000 ID=Potri.018G128000.1.v4.1 annot-version=v4.1 ATGTCTTCGCTTAGTAGAGAGCTTGTGTTTCTCATACTTCAGTTTCTCGAGGAAGAGAAATTTAAAGAAACTGTTCACAGATTGGAGCAAGAGTCAGGGT TTTACTTTAACATGAGGTACTTTGAAGAAATGGTGACAAATGGAGAGTGGGATGAAGTGGAGAAGTATTTGTCAGGGTTTACGAAAGTGGATGATAATAG ATATTCGATGAAGATTTTCTTTGAGATTCGGAAGCAAAAGTACCTTGAAGCTTTGGACAAGCGAGATCGTGCGAAGGCAGTTGAAATTTTAGTGAAGGAC TTGAAAGTGTTTGCGGCATTTAATGAAGAGCTGTTTAAAGAAATTACGCAGCTACTGACGTTGGAAAACTTTAGAGATAATGAACAGCTATCCAAATATG GAGACACCAAGTCTGCTAGGGGTATAATGCTCGGTGAACTCAAAAAGTTGATAGAGGCTAACCCTCTTTTCCGTGACAAGCTTCAGTTTCCTACTTTGAA AAACTCAAGATTGCGGACTCTAATTAATCAGAGTTTAAATTGGCAACATCAGCTTTGTAAGAGTCCAAGGTCTAATCCTGACATAAAGACTTTATTTGTT GACCACAGTTGTGGGCAACCAAATGGTGCGCGGGCCCCATCCCCTGTCACCAATTCCTTAATGGGTGGTGTGCCCAAGTCAGGGGGGTTTCCTTCAATAA CCGGTCATGGTCCATTTCAGCCTGCGCCTGCAGCTCTTCCATCTTCTCTTGCAGGATGGATGGCGAATCCATCTGCTTCTGCTGGGCCCCTAGGTTTGGC TCCCAATAACACAGCAGCTATCTTAAAGCATCCCAGGACTCCCCCTACCAATAACCCAGCTATTGACTATCAAACAGCAGACTCTGAACATGTGTTGAAG AGGCCAAGACCATTTGGACTATCGGATGAGGTCAATCTCCCAATAAACATTATGCCTATGGCTTATACGAGCCAGAACCATGGGCAAAACTCCTACTCTT CTGATGACTTGCCCAAGAATCCTGTCATGGCTTTAAATCAAGGTTCTGCTGTCAAGAGTATGGATTTTCATCCAGTCCAACAAATTCTACTTCTTGTTGG AACAAACATGGGTGAAGTCATGGTATGGGAGTTGGGCAGCAGAGAAAGGATTGCTGGGAGGAATTTCAAGGTTTGGGACCTTAATGCACGCTCAAGAGCT CTGCAGGCATCTCTGTCCAATGATTATACAGCATCCGTTAACCGTGTGGCGTGGAGTCCTGATGGAACTTTATTTGGTGTTGCATACTCCAAGCACATTA TGCACGTATACTCCTACCATGGCGGTGACGACATAAGAAATCACCTTGAGATGGATGCTCATAATGGGAATGTAAATGATCTTGCTTTTGCTTACCCAAA CAAGCAACTTGTTGTAGTCACTTGTGGCGATGACAGGACCATCAGGGTTTGGGATGCGATTGTGGGGACTCGACTGTTTAATTTTGTTGGTCATGATGCA CCTGTATATTCTGTGTGCCCACATCACAAGGAAAATATTCAGTTTATCTTTTCAACCGCAACTGATGGAAAGATAAAGGCATGGTTGTATGATAATGCGG GTTCAAGAGTCGACTATAATGCACCAGGGCATTCTTCTACCACAATGGCATACAGTGCTGATGGAACTAGGTTATTCTCATGTGGGACAAACAAAGAAGG AGAATCACACTTGGTGGAGTGGAATGAAAGCGAAGGAGCTGTGAAACGTACCTATAATGGTCTTGCAAAGCGTTCCGGGGGTGTTGTGAAGTTTGATACC ACTAAAAATCGATTCTTGGCAGCTGGGGATGATTTCATGATCAAGTTTTGGGACATGGATAATAACAACCTGTTGACAACTATTGATGCAGAGGGTGGAT TGCCGGCTTCTCCTTGTATTAGATTTAACAAGGAAGGAACGCTATTAGCAGTCTCAACAAATGACAATAGCATCAAAATTCTAGCAAATTCAGATGGGAT CAGGCTGCTCCGGACAGTGGAGAGTCGTACATTTGATGCTTCTAGAGCTTCTTCTGCTGCTGTTGCGAAGGCCCCTGCAATAGGCACTTTTCCGCCTGCT AATGCCACAGTTGGAACTAGCATCGATAATCAAGCTGCTCCTGCAGCACCCATGGTTGGAATGAATAGTGACAATCGAAGTTTAGTTGACGTGAAGCCTA AAATTCAAGACGAATCAATTGAAAAATCTAGGATCTGGAAATTAACAGAAATAAATGAACCATCACAGTGTCGCTCCCTGAGGCTCCCTGATAGCTTGAC TGCCATGAGGGTGTCTAGATTGATTTTTACAAATTCAGGAGTTGCCATATTGGCACTAGCATCTAATGCAGTGCACAAGCTTTGGAAGTGGCAGAGAAAT GATCGAAACTTGCCTGGGAAGGCCACTGCTAGTGTACCACCTCAATTATGGCAGCCTTCTAGCGGAATTTTGATGACTAATGATATCAGTGACACAAATC CTGAAGATGCTGTTCCGTGCTTTGCACTTTCAAAGAATGATTCTTATGTTATGTCAGCTTCAGGAGGGAAGATTTCTCTTTTCAATATGATGACATTTAA GACAATGACAACATTCATGGCTCCACCACCAGCTGCAACATTTTTAGCATTTCACCCTCAAGACAACAATATCATTGCTATTGGCATGGAGGACTCTTCT ATACAAATTTATAACGTCAGGGTTGATGAGGTTAAAACAAAGTTAAAAGGTCATCAGAAAAGAATTACAGGACTCGCCTTCTCGCACTCTCTAAATGTCC TGGTGTCTTCCGGAGCTGACTCGCAGTTGTGTGTTTGGAGCACCGATGCATGGGAGAAACAAGCTAGTAAATTCTTGCAAATTCCAACTGGACGAGTTGC TTCTTCTCTTGCAGATACACGTGTTCAATTTCACCTTGACCAGATACATTTGCTTGCGGTTCATGAAACACAGATAGCTATATTTGAAGCACCAAAATTG GAATGCCTCAAGCAGTGGTTCCCTCGTGAAGCAAGTGGTCCGATTACGCATGCTACGTATTCCTGTGATAGCCAATCTATATATGTTAGTTTTGAAGATG GAAGTGTGGGTGTTCTCACTGCTTCAACACTAAGATTGAGATGCAGAATAAATTCTACTGCTTATTTACCTCCCAATCCAAGCTTGAGAGTGTATCCTCT TGTCATTGCTGCACATCCCTCTGAGCCTGATCAATTCGCACTGGGACTAACAGACGGTGGAATTCATGTGCTTGAACCATTGGAGTCGGAAGGAAAATGG GGGACCTCGCCTCCTGTTGAAAATGGTGCTGGCCCTAGTACAGCTTCTGGTGCTGCTGGTTCTGAACAAGCTCAAAGGTAG
AA sequence Show only first row Show all	>Potri.018G128000.1 pacid=42800664 polypeptide=Potri.018G128000.1.p locus=Potri.018G128000 ID=Potri.018G128000.1.v4.1 annot-version=v4.1 MSSLSRELVFLILQFLEEEKFKETVHRLEQESGFYFNMRYFEEMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKD LKVFAAFNEELFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLNWQHQLCKSPRSNPDIKTLFV DHSCGQPNGARAPSPVTNSLMGGVPKSGGFPSITGHGPFQPAPAALPSSLAGWMANPSASAGPLGLAPNNTAAILKHPRTPPTNNPAIDYQTADSEHVLK RPRPFGLSDEVNLPINIMPMAYTSQNHGQNSYSSDDLPKNPVMALNQGSAVKSMDFHPVQQILLLVGTNMGEVMVWELGSRERIAGRNFKVWDLNARSRA LQASLSNDYTASVNRVAWSPDGTLFGVAYSKHIMHVYSYHGGDDIRNHLEMDAHNGNVNDLAFAYPNKQLVVVTCGDDRTIRVWDAIVGTRLFNFVGHDA PVYSVCPHHKENIQFIFSTATDGKIKAWLYDNAGSRVDYNAPGHSSTTMAYSADGTRLFSCGTNKEGESHLVEWNESEGAVKRTYNGLAKRSGGVVKFDT TKNRFLAAGDDFMIKFWDMDNNNLLTTIDAEGGLPASPCIRFNKEGTLLAVSTNDNSIKILANSDGIRLLRTVESRTFDASRASSAAVAKAPAIGTFPPA NATVGTSIDNQAAPAAPMVGMNSDNRSLVDVKPKIQDESIEKSRIWKLTEINEPSQCRSLRLPDSLTAMRVSRLIFTNSGVAILALASNAVHKLWKWQRN DRNLPGKATASVPPQLWQPSSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATFLAFHPQDNNIIAIGMEDSS IQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADSQLCVWSTDAWEKQASKFLQIPTGRVASSLADTRVQFHLDQIHLLAVHETQIAIFEAPKL ECLKQWFPREASGPITHATYSCDSQSIYVSFEDGSVGVLTASTLRLRCRINSTAYLPPNPSLRVYPLVIAAHPSEPDQFALGLTDGGIHVLEPLESEGKW GTSPPVENGAGPSTASGAAGSEQAQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Potri.018G128000 [exp]	0	1
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Potri.005G027400 [exp]	13.92	0.7696
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093650 [exp]	14.14	0.7499
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Potri.013G019600 [exp]	16.24	0.7800
AT4G31020			alpha/beta-Hydrolases superfam...		Potri.018G111400 [exp]	23.32	0.7477
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.003G041650 [exp]	24.65	0.6425
AT3G24255			RNA-directed DNA polymerase (r...		Potri.004G185050 [exp]	27.92	0.7600
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G103000 [exp]	28.37	0.7061
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015966 [exp]	28.56	0.6826
AT1G64295			F-box associated ubiquitinatio...		Potri.010G224400 [exp]	34.91	0.7239
AT5G47580		ASG7	ALTERED SEED GERMINATION 7, un...		Potri.001G123100 [exp]	36.27	0.7166

Compare expression of checked genes

Potri.018G128000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.