Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42160 621 / 0 BRIZ1 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) AT2G26000 389 / 1e-131 BRIZ2 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) AT2G27160 65 / 1e-12 unknown protein AT2G14830 40 / 0.001 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110500 [exp] 453 / 3e-156 AT2G26000 605 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.007G063900 [exp] 430 / 2e-147 AT2G26000 600 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.009G090100 [exp] 44 / 4e-05 AT2G14830 193 / 3e-64 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038095 [exp] 703 / 0 AT2G42160 684 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Lus10006651 [exp] 699 / 0 AT2G42160 674 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Lus10035023 [exp] 380 / 1e-127 AT2G26000 631 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Lus10021683 [exp] 323 / 3e-105 AT2G26000 565 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF02148 [poplar] [flax] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0221 [poplar] [flax] RRM PF07576 [poplar] [flax] BRAP2 BRCA1-associated protein 2
Representative CDS sequence Show only first row Show all	>Potri.018G128100.1 pacid=42801650 polypeptide=Potri.018G128100.1.p locus=Potri.018G128100 ID=Potri.018G128100.1.v4.1 annot-version=v4.1 ATGTTCAGCCTCCGAGTCCACTCAGTAGACAGCAATCATCCTCTAACTCTTGAAGAAACCACCTTCATCTCCGCGGCCGCCACCACCTCCACCACGGCAG CCACCACCAAATTCAATGAAAGGAGAGGCATTTCACATCTATATCGAAACGCATCGCAGAAATCCTCACTGCCAAACCCTAATCCTAACTCTCGATCCAC TTCTCTCTTCGTCGTCGCCGTCCCTAACTACTTCTCCGAAGACGACTTCATCAGATTCTGCGGTTCCCATATTGATCATGTCCATGTACTCCTCTTCATC AGGAATGATGGGATGGAAGATAGGTACAGTGTGTTAATAAAGCTTGATAATCAAGTAACAGCTGATAGATTCTACTATAGTTTCAATGAGAAGCGATTTT CGCCATCTGAGGCAGAGATTTGCCATATACTATATGTGCTTTCCGTGGAATTCACGGAATCGGCAGAAATAGCTAGCACTCCTCCGGAAAATTTCACTGA GTTGCCAGCTTGTCCAATTTGTCTCGAGAGATTGGACCCGGACACTAGTGGAATACGCAATACTCTTTGTGATCATTCGTTTCAATGTTCATGCACTTCA AAATGGACGCACTTGTCTTGCCAGGTCTGTCGTCTTTGTCAGCAGCAGGATGAGAAGCCAGCTTGTTCTGTTTGTGGAACTTCAGAAAATTTGTGGGTTT GTCTGATATGCGGTTTTGTAGGATGTGGAAGATATAAAGAAGGACATGCTAAAAGGCACTGGCAAGATACACAGCATTGTTATTCTCTTGATCTGAGAAC ACAACAAATTTGGGACTATGTTGGCGACAACTATGTTCATCGGCTGAACCAGTCAAAAACTGATGGCAAGTCGATAGATACAAACTCTTGTTGTGTGTCG TTTGAAGGAGATTGTGGCACTTGTGGATGTAGTGAGGATTCTGGAATTAGTGGGGCTCTCTTTAGCAGCAAAGTTGAAGCAATTGCAGATGAGTACAATC GTCTTTTGGCCACTCAGCTGGAGGCTCAAAGACAACATTATGAATCTCTAATTATTGAGGCCAAAAGTAAAAGACAAAGTTCCATTTCAGAAGCAGTAGA GAATGCTGTGACATCCACTATGCAGGATATCCAAAATAAACTGGAAAAGTGTGAGCTAGAAAAAAATGCTGTAGCAGATATCAATCGGGGTCTCATCAAG AATCAAGAAATTTGGCGTAAAAAGGTCAAGGAACTTGAAGATAGGGGAACTTCATCTTTATCATCAAGGGACGAGAGAATACATGATCTGGAAGAACAGA TTCGAGATCTCACAGTCTACATTGAAGCTCAGAAAACACTTCACACCATGACAGATACAGATGATGGGATTAAAGGAGGGACATTGTTACCTGTACCTCC GAAGCAGTCTTCGCCAGCAAATAGCAGAAAACACACAAAACTGGGTCGTAAACGGAATTAG
AA sequence Show only first row Show all	>Potri.018G128100.1 pacid=42801650 polypeptide=Potri.018G128100.1.p locus=Potri.018G128100 ID=Potri.018G128100.1.v4.1 annot-version=v4.1 MFSLRVHSVDSNHPLTLEETTFISAAATTSTTAATTKFNERRGISHLYRNASQKSSLPNPNPNSRSTSLFVVAVPNYFSEDDFIRFCGSHIDHVHVLLFI RNDGMEDRYSVLIKLDNQVTADRFYYSFNEKRFSPSEAEICHILYVLSVEFTESAEIASTPPENFTELPACPICLERLDPDTSGIRNTLCDHSFQCSCTS KWTHLSCQVCRLCQQQDEKPACSVCGTSENLWVCLICGFVGCGRYKEGHAKRHWQDTQHCYSLDLRTQQIWDYVGDNYVHRLNQSKTDGKSIDTNSCCVS FEGDCGTCGCSEDSGISGALFSSKVEAIADEYNRLLATQLEAQRQHYESLIIEAKSKRQSSISEAVENAVTSTMQDIQNKLEKCELEKNAVADINRGLIK NQEIWRKKVKELEDRGTSSLSSRDERIHDLEEQIRDLTVYIEAQKTLHTMTDTDDGIKGGTLLPVPPKQSSPANSRKHTKLGRKRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Potri.018G128100 [exp]	0	1
AT1G68670	GARP		myb-like transcription factor ...		Potri.008G117500 [exp]	11.40	0.6701
AT5G56420			F-box/RNI-like/FBD-like domain...		Potri.016G106600 [exp]	14.14	0.7610
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.001G289800 [exp]	18.89	0.6985
AT1G13480			Protein of unknown function (D...		Potri.018G008300 [exp]	29.74	0.6929
AT1G20100			unknown protein		Potri.002G019200 [exp]	36.00	0.6898
AT3G57710			Protein kinase superfamily pro...		Potri.013G020100 [exp]	37.30	0.6758
AT2G17787			unknown protein		Potri.005G242300 [exp]	37.45	0.6240
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032200 [exp]	40.74	0.6118
AT2G30000			PHF5-like protein (.1)		Potri.009G072400 [exp]	59.57	0.6671
AT2G28390			SAND family protein (.1)		Potri.009G014400 [exp]	59.86	0.6300

Compare expression of checked genes

Potri.018G128100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.