Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32285 627 / 0 ENTH/ANTH/VHS superfamily protein (.1.2) AT2G25430 622 / 0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT1G03050 413 / 3e-137 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 390 / 3e-128 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 242 / 3e-71 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 198 / 6e-55 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 195 / 1e-54 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 191 / 5e-53 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 173 / 8e-47 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 166 / 7e-44 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066900 [exp] 930 / 0 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G255000 [exp] 706 / 0 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.018G026900 [exp] 508 / 5e-173 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G118100 [exp] 413 / 1e-137 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 263 / 3e-79 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 255 / 3e-76 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 222 / 2e-64 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 206 / 7e-59 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 196 / 6e-55 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001502 [exp] 667 / 0 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10002920 [exp] 666 / 0 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10019402 [exp] 603 / 0 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10043260 [exp] 533 / 0 AT4G32285 506 / 2e-173 ENTH/ANTH/VHS superfamily protein (.1.2) Lus10012686 [exp] 267 / 8e-81 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10020824 [exp] 260 / 3e-78 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 261 / 1e-77 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 214 / 2e-61 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10029998 [exp] 214 / 7e-59 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 209 / 7e-58 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.018G128200.1 pacid=42802054 polypeptide=Potri.018G128200.1.p locus=Potri.018G128200 ID=Potri.018G128200.1.v4.1 annot-version=v4.1 ATGGCACTACGTAAAGCAATTGGGGCTGTGAAAGATCAGACGAGTATAAGTATAGCGAAAGTGGCAGCGAATACATCAGCAGAACTTGAGGTTTTGGTTG TTAAAGCTACTAGTCATGATGAGGATCCTGCTGGTGAGAAGTATTATAGGGAGATTATAAGCCGTATTTCGAGTTCAAGGGGTTATGTGAATGCTTGTGT GGCTACTATATCGAGAAGGATAAGTAAAACCCGTGATTGGATTGTGGCTTTGAAGGCGTTGATGCTTGTCCATAGGGTTTTGATTGATGGGAACCCTTTG TTTGAGGAGGCGTTATTGTTTGCGACGAGGAATGGGATGCGTGTCTTGAATATGTCGGATTTTAGAGATGAGGCGCATTCTAATTCGTGGGATCACACAG GGTTTGTGAGGTTTTACGCGATGTTTCTCGATGAGAAGGTCGAGTTTTCTGTTTTTGAGAGGAAAGTGAGGGAGGATGAGAGGAAATTTGATGAGGGCGG TGATGGGTTTGGACGTGGAGAGAATAGGGATGAATTTGAGTATGGGATGCCCAAGAGATCAAGCTCCTATGGTGATTTGGTTAGGCGTGAACAGAAGATG GAAGTAGCAGCAATTAGGGAAATGAAGCCAGAGAGACTCTTAGGCATATTGGACCAGCAGTTGAGGATCCTTGATAGAGTTTTGGCTTGCAGACCAACAG GAATAGCCAAGAATGATAGATTGGTGCTTGTAGCCCTTTACCAGGTGGTGAAGGAGAGTTTTGGACTATACACCGAGGTTTGTGAGGCATTGGGGGTGTT GTTGGATAGATTTACTGAGATGGAGTATGCATATTGTCTTAAAGGTTTTGATATTTATGCTGGCGCAGCCAAGATAATTGATGAGCTGGTGGTGTTTTAT GTTTGGTGCAAGGATATAGGAATTGGAAGATCATCTGAGTATCCTGAAGTGCAGAAGATTACTGAAAATATTTTGGGGGCCCTCGGGGAGAGCTTGAGAG AAATGACTAACAGACGAACTAAGAGTTCCGAGAGAAGTATAGAGGAGAAGGTTCCTGCTAAGCAAGACCAAGAACCTGGTATGAATGAGGTCAAGTCTCT TCCTCCTCCAGAGAGTTATACCCCTCCTCCACCCCCTCCTTCGCAGCAGCCTCAGCCTCAGCCTCAGCCTCAACAGATGACAGAAGATTTGGTAAATCTC AAGGACGGTGGCATTTCAGCAGATGAGCAGGGCAACGAATTGGCTTTGGCTTTGTTCTCTGGACCCCCAACTACAAATGCAAATGGTGCGTGGGTAGCAT TCCCATCACCTAGAGAACCTGAAGTGACTTCAGCATGGCAAACCCCAGCTGCTCAGAGTAGTCAAGCAGATTGGGAATTGGCGTTGGTGGAGTCAGCTAG CAATCTATCGAAACAGAGAGCTACTTTAGGGGGTGGATTTGATTCATTGCTCTTGAATGGAATGTATGATCAGGGGGCAGCAAGGCAACATGTGAGCACA ACACAACTGACTGGCGGGAGTGCTAGTAGTGTGGGCAAGAGTGCAACACCAGTGTTGGCATTGCCTGCTCCTGATGGGACAATGCAGCCAGTTCAGAATC AGGACCCGTTTGCTGCCTCCCTTACAGTTCCGCCTCCTTCCTATGTGCAGATAGCAGAAATGGAGAGGAAGCAGCATTTTCTAGTAAATGAACAGCAGCT CTGGCAACATTACGGAAGGGATGGGATGCACGGTCAAGTGGGTTTGGCCAGGATTAATGGTGCCTCTGGTTACTATGGCCCTAGTCCTCATCCAATGGTG ATGCCTTCCGGGATGCCACAGGTCAGTGGCATGAGGCAGCAGGGGGGGCACTACTATCCCTCCTATTAA
AA sequence Show only first row Show all	>Potri.018G128200.1 pacid=42802054 polypeptide=Potri.018G128200.1.p locus=Potri.018G128200 ID=Potri.018G128200.1.v4.1 annot-version=v4.1 MALRKAIGAVKDQTSISIAKVAANTSAELEVLVVKATSHDEDPAGEKYYREIISRISSSRGYVNACVATISRRISKTRDWIVALKALMLVHRVLIDGNPL FEEALLFATRNGMRVLNMSDFRDEAHSNSWDHTGFVRFYAMFLDEKVEFSVFERKVREDERKFDEGGDGFGRGENRDEFEYGMPKRSSSYGDLVRREQKM EVAAIREMKPERLLGILDQQLRILDRVLACRPTGIAKNDRLVLVALYQVVKESFGLYTEVCEALGVLLDRFTEMEYAYCLKGFDIYAGAAKIIDELVVFY VWCKDIGIGRSSEYPEVQKITENILGALGESLREMTNRRTKSSERSIEEKVPAKQDQEPGMNEVKSLPPPESYTPPPPPPSQQPQPQPQPQQMTEDLVNL KDGGISADEQGNELALALFSGPPTTNANGAWVAFPSPREPEVTSAWQTPAAQSSQADWELALVESASNLSKQRATLGGGFDSLLLNGMYDQGAARQHVST TQLTGGSASSVGKSATPVLALPAPDGTMQPVQNQDPFAASLTVPPPSYVQIAEMERKQHFLVNEQQLWQHYGRDGMHGQVGLARINGASGYYGPSPHPMV MPSGMPQVSGMRQQGGHYYPSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.018G128200 [exp]	0	1
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.010G246200 [exp]	1.00	0.8424
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.002G203200 [exp]	4.58	0.7790
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.017G017800 [exp]	8.24	0.8055
AT3G19330			Protein of unknown function (D...		Potri.010G240200 [exp]	13.74	0.8007
AT1G36990			unknown protein		Potri.005G172100 [exp]	23.21	0.7751
AT1G36990			unknown protein		Potri.002G089100 [exp]	24.33	0.7925
AT3G21320			unknown protein		Potri.003G045000 [exp]	25.88	0.7914
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G087500 [exp]	26.32	0.7472
					Potri.011G062950 [exp]	32.72	0.7753
AT3G51270			protein serine/threonine kinas...		Potri.017G001100 [exp]	32.72	0.7680

Compare expression of checked genes

Potri.018G128200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.