Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARP6.1,ARP906
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G33520 649 / 0 SUF3, ESD1, ATARP6 SUPPRESSOR OF FRI 3, EARLY IN SHORT DAYS 1, actin-related protein 6 (.1) AT3G53750 189 / 9e-56 ACT3 actin 3 (.1) AT2G37620 189 / 9e-56 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT2G42100 188 / 1e-55 Actin-like ATPase superfamily protein (.1) AT2G42090 187 / 4e-55 ACT9 actin 9 (.1) AT3G12110 186 / 7e-55 ACT11 actin-11 (.1) AT1G49240 184 / 4e-54 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 184 / 4e-54 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT5G09810 182 / 2e-53 ACT2/7, ACT7 actin 7 (.1) AT3G46520 175 / 1e-50 ACT12 actin-12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045500 [exp] 186 / 6e-55 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 186 / 6e-55 AT3G12110 767 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 186 / 1e-54 AT3G12110 765 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 185 / 1e-54 AT3G12110 733 / 0.0 actin-11 (.1) Potri.001G309500 [exp] 184 / 3e-54 AT5G09810 775 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 184 / 4e-54 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 182 / 3e-53 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 180 / 1e-52 AT5G09810 731 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 166 / 9e-47 AT5G09810 554 / 0.0 actin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006654 [exp] 719 / 0 AT3G33520 623 / 0.0 SUPPRESSOR OF FRI 3, EARLY IN SHORT DAYS 1, actin-related protein 6 (.1) Lus10006784 [exp] 186 / 2e-54 AT5G09810 769 / 0.0 actin 7 (.1) Lus10001694 [exp] 186 / 2e-54 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 186 / 2e-54 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005457 [exp] 185 / 2e-54 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 185 / 2e-54 AT3G12110 768 / 0.0 actin-11 (.1) Lus10016558 [exp] 185 / 2e-54 AT3G12110 768 / 0.0 actin-11 (.1) Lus10006783 [exp] 184 / 4e-54 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 184 / 4e-54 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005819 [exp] 184 / 4e-54 AT5G09810 778 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.018G128300.1 pacid=42801781 polypeptide=Potri.018G128300.1.p locus=Potri.018G128300 ID=Potri.018G128300.1.v4.1 annot-version=v4.1 ATGTCAAGCGTCGTCGTTCTCGACAACGGCGGTGGCCTAATCAAAGCCGGCTACGGCGGGGAACGTGACCCCTCCACCATAATCCCAAACTGCCTCTATC GTCCTCTCTCCTCCAAAAAATTCCTCCACCCCACTCCCACCACCGAAGAAGATCTCACCTCCGCCGCCGTCCGCCGCCCCATAGACCGAGGCTACCTAAT AAACCCAGACCTCCAACGCGATATCTGGAACCACCTCTTCTCCAATCTCCTCCACATAAACCCATCAAACTCTTCTTTACTACTAACAGAACCCTTGTTT TCTCTCCCTTCAATTGAACGTGCAACGGATGAGCTTGTTTTTGAAGATTTTGGGTTCAATTCTCTGTTCATTTCTGATCCACCGAAGTTGGTTCATCTTT ATGAGGCGAGTAGAAGGCCATATGGGTTAGTTTCAAAAGCGCAATGTAGCTTAGTTGTGGATTGTGGGTTTAGTTTTACGCATGCTGCGCCTGTGTTTCA GAACTTTACGTTGAATTATGGAGTGAAAAGGATTGATTTAGGAGGAAAAGCGTTGACGAATTTTTTGAAGGAATTGGTGTCTTACAGGAGTGTTAGTGTT ATGGATGAAAGTTTTATTATGGATGATGTCAAGGAGAAGTTGTGCTTTGTTTCTCTTGATGTTGCTAGAGATTTGAAGATTGCAAGGAGACGAGGAAACG ACAATTTTTTTAGGTGTACTTATGTTCTACCTGATGGAGTGACCCACACAAAAGGTTTTGTTAAAGACCCAGATGAAGCAAAGAAGTATCTCACTGTGGA TGATGGAGCGTATTTAGAAACGAGAAAGGATATGGATCGCACTGAAATTATGGACCGAAAGAAAGTTGATTTAACTAAAAATGAGTTTGACTTGACAAAT GAACGGTTCCTGGTTCCAGAGATGATTTTCCACCCAGCAGATTTAGGTATGAATCAGGCTGGACTAGCAGAGTGCATTGTTCGAGCTGTGAACTCTTGCC ATCCTCTTCTTCATCCTCTACTCTACCAAAGCATTATATTAACTGGTGGAAGCACATTGTTCCCTAGATTTGCTGAGAGACTTGAAATGGAGCTTCGACC TCTTGTCCCAGATGACTATCAAGTGAAGATAACTACACAAGAAGATCCTATTCTAGGTGTGTGGCGAGGTGGATCCCTTTTGGCATCCAGTCCTGATTTT GAAGCAATGTGTGTTACCAAGGCAGAGTATGAGGAACTTGGATCTGCTCGATGTCGAAGGAGATTCTTTCATTGA
AA sequence Show only first row Show all	>Potri.018G128300.1 pacid=42801781 polypeptide=Potri.018G128300.1.p locus=Potri.018G128300 ID=Potri.018G128300.1.v4.1 annot-version=v4.1 MSSVVVLDNGGGLIKAGYGGERDPSTIIPNCLYRPLSSKKFLHPTPTTEEDLTSAAVRRPIDRGYLINPDLQRDIWNHLFSNLLHINPSNSSLLLTEPLF SLPSIERATDELVFEDFGFNSLFISDPPKLVHLYEASRRPYGLVSKAQCSLVVDCGFSFTHAAPVFQNFTLNYGVKRIDLGGKALTNFLKELVSYRSVSV MDESFIMDDVKEKLCFVSLDVARDLKIARRRGNDNFFRCTYVLPDGVTHTKGFVKDPDEAKKYLTVDDGAYLETRKDMDRTEIMDRKKVDLTKNEFDLTN ERFLVPEMIFHPADLGMNQAGLAECIVRAVNSCHPLLHPLLYQSIILTGGSTLFPRFAERLEMELRPLVPDDYQVKITTQEDPILGVWRGGSLLASSPDF EAMCVTKAEYEELGSARCRRRFFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Potri.018G128300 [exp]	0	1	ARP6.1,ARP906
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Potri.008G193700 [exp]	1.00	0.8962
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	1.73	0.8081
AT5G48030		GFA2	gametophytic factor 2 (.1)		Potri.009G065500 [exp]	4.47	0.8256	GFA2.1
AT2G25970			KH domain-containing protein (...		Potri.006G231800 [exp]	7.34	0.7857
AT1G02060			Tetratricopeptide repeat (TPR)...		Potri.014G056400 [exp]	12.16	0.7928
AT4G10070			KH domain-containing protein (...		Potri.019G072500 [exp]	41.47	0.7750
AT5G64970			Mitochondrial substrate carrie...		Potri.005G165200 [exp]	43.79	0.7837
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.003G056400 [exp]	47.24	0.7352
AT5G23890			unknown protein		Potri.015G145700 [exp]	58.01	0.7366
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	67.45	0.7413

Compare expression of checked genes

Potri.018G128300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.