Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G33530 1613 / 0 Transducin family protein / WD-40 repeat family protein (.1.2.3) AT2G26610 1495 / 0 Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038096 [exp] 1766 / 0 AT3G33530 1721 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10019403 [exp] 1711 / 0 AT3G33530 1732 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10043261 [exp] 1683 / 0 AT3G33530 1707 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10006655 [exp] 1605 / 0 AT2G26610 1476 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G128400.1 pacid=42800907 polypeptide=Potri.018G128400.1.p locus=Potri.018G128400 ID=Potri.018G128400.1.v4.1 annot-version=v4.1 ATGTCCCTCTCTAGATCACAACCAAGCACCACCACAACTGATACAATCCTCCCTGGCCCACCTTCCCGCAATAACTTTTCCTCCCTCGATCTTTCATCTT CAAATCTCCTCGCCTTTCCCTCCGGTTCTTCCATTTCCATCGTTGATGCTCTTTCCCTCCAGTTAATCTCCACTTTTCCTCTCCCTCCTCCTCCTTCTTC CACTTCCTCTCCTTCTCTTTCCCCCTTCATCACTTCCGTACGCTTCACGCCTTCTCCTCTCAATCGCAACCTCCTCTCCACCGAACCTTCCTCCTCCCAC CTCCTCCTCGCCGCCGCCGACCGCCATGGCCGTATTGCTCTCCTCGATTTCCGCCTCAAGTCCATTGTCCTCTGGCTCGAACCTGATCCCAATCCGAAAT CTGGTATCCAAGACCTCTGCTGGATCCTCTCTCGTTCCGATTCATACGCCCTCGCTGCCATTTCTGGTCCTTCTTCTCTTTATCTCTACACCACCACCGG CGCCGCTTCCACTGCCACCGCTTCGAATTGTTGTTTCTTTAAGTACGATGCGTCGCCGGAGTTTTTGTCGTGCATTCGTCGTGATCCGTTTGATTCGCGG CATTTTTGTGTCATCGGACTTAAAGGATTTTTATTGTCGGTGAAAGTGCTCGCAGAGAGTGAGAATGACGTCATTTTAAAGGAATTTAAGATTCCGACGG ATTATAGTGATTTGTTGAGGCTAGAGAAAGACGTAACGCCGAGCAGTGGTGGTGTGGGAGGATCCTTGGCGCCGGCATCGGCGGTTTTTCCGTTGTATAG TGTGAAAATGGCGTTTTCACCACAATGGAGGAATATTCTGTTTGTCACGTTTCCTAGGGAGCTTGTGGTTTTTGATTTGAAATACGAGACCGTGCTTTTT AGCGCTGCATTGCCTAGAGGCTGTGGGAAGTTTCTAGATGTTTTGCCGGATCCGAATAATGAATTGCTTTACTGCGCTCATCTTGATGGAAAGCTCAGTA TTTGGCGGCGAAAAGAAGGAGAACAGGTGCATGTAATGTGTGCAATGGAGGAGTTGATGCCGTCAATTGGAACATCGGTCCCTTCTCCTTCAGTTCTAGC TGTTGCCATTTGTCAGTCAGAGTCTACGCTCCAACATGTTGCTAAGATTTGTTCTGATGCACCTGATTCTCCGTCGGCTGAGGTGGATTTTGACAATCCT TTTGATTTCTGTGATGATACTGTTGTTCACTCTACTACACATATGATCTCAATTTCTGATGATGGAAAAGTATGGAACTGGCTGTTAACTGCTGAAGGGA CTGGAGACAATCATAAGGATACGGTTGCTGATTCCCGTGAAATTCCACTTATAGGGGACAATGCCAATGCTGTAGTTGTGACTGATGGACTTGGCAAAGA AGCAGGCAAGCAACAAGAGCTTGGGAATGGCAATAAAAACCGCCTCTCATCTACTTTGAGCCAGGATTTGTCGTTTAAGATCAGTTTAGTTGGACAGCTG CAGCTTCTTTCTTCGACAGTTACTATGCTGGCTGTACCCTCTCCTTCTCTAATAGCTACTTTGGCCCGTGGGGGGAATTATCCTGCTGTAGCTGTTCCTC TGGTTGCTCTGGGTACTCAATCTGGGACAATTGATGTTGTTGATGTTTCTGCAAATGCTGTTGCAGCTAGTTTTTCAGTTCATAATAGTACGGTTAGGGG GTTACGATGGCTTGGAAATTCTAGACTTGTTTCATTTTCTTACAATCAGGTGAATGAAAAAAATGGAGGTTACAATAATCGGCTTGTTGTAACCTGTCTT AGAAGCGGTCTTAACAGACCATTTCGAGTTTTACAAAAGCCAGAACGTGCACCCATTAGAGCTCTACGAACTTCTTCATCTGGAAGGTATCTTCTTATTT TATTCCGTGATGCACCGGTGGAGGTTTGGGCAATGACAAAAACTCCCATCATGCTTAGATCATTAGCTCTTCCATTTACGGTATTGGAATGGACTCTTCC AACAGTTCCTCGGCCAGTTCAAAATGGTCCTTCTAAACAAGTGTTGTGGTCATCGAAAGATCAAACGCCTGTAGCACAAGATGGAGCATCCACTGCAAAG GAACCTGCATCAGAATCCACAGCAGGAAGCTCAGATGCTTCTCAGGATGACACTGCTGAAAGTTTTGCATTTGCACTAGTAAATGGTGCTCTTGGAGTTT TTGAGGTTCATGGGCGGAGGATCCGGGATTTCAGACCGAAATGGCCTTCATCTTCATTTGTGTCTTCTGATGGATTGATTACGGCCATGGCCTACCGCTT GCCTCATGTTGTCATGGGGGATAGGTCTGGGAACATACGGTGGTGGGATGTAACAACTGGGCATTCTTCATCATTTAACACTCACAGGGAAGGAATCAGG AGAATCAAATTCTCACCTGTTGTTCCTGGAGACCGCAGCCGAGGACTTATTGCTGTCCTTTTTTATGACAATACCTTTTCTATTTTTGACCTTGATTTGC CAGACCCGTTAGCTAATTCCCTTTTACAACCTCTATTTCCTGGAACCCTTGTGTTGGAACTCGATTGGTTGCCTCTGCGAACTAATAGAAATGACCCTCT GGTATTATGTATTGCTGGAGCTGATAGTAGCTTTCGCCTTGTTGAGGTTAACGTAAATGACAAAAAACTTGGCCTCCAACCCCGAGCTATTAAAGAAAAA TTTCAGCCTATGCCTATATGCTCTCCCATACTGCTTCCCACACCACATGCACTGGCATTGCGGATGATCTTGCAATTAGGTGTCAAACCCTCTTGGTTTA ACACTTGCAGCACAACTATTGACAAGAGGCCTCACTTAATTCCTGGAACTGCTTCATTCAAAGGGGATCTCCGGAATTACATAATTGATCTTCCACCTGT TGGTGACTCTGTGGTGCCAGAAATGCTCCTCAAAGTGTTAGATCCTTACAGGAGAGAAGGCTGCATACTTGATGATGAAACGGCTAGACTATATGCTATC GTAGTCAAGAAAGGCTGTGCTGCGAGGTTTGCATTTGCAGCTGCAATTTTTGGTGAAACCTCAGAAGCACTATTCTGGTTGCAGTTGCCTCGTGCTCTTA AACATTTGATGGATAAGCTAGTTACGAAGTCAACACAGAAAGCACCTGTCTCAGCATCAACCCCAGAGCTTGATGACGTGACTATGCTGAACAGAATTTC ATCAAAGGGGAGGTCGGTAATTGGGACTGAGAAAAAGGATCCATTGAGTGAAGGTCAACTTAGATCAATGGCTTTCCAGAAAGAAGAACTATGGGAAAGT GCTTGTGAGCGCATTCCTTGGCATGAGAAATTGGAGGGAGAAGAGGCTATTCAGAATCGAGTACATGAGCTCGTTTCTATTGGAAACTTAGAAGCAGCAG TCAGCTTGTTGCTTTCTACTTCTCCTGAGAGCTCTTATTTCTATGTAAATGCTCTACGTGCAGTCGCTCTCTCGTCTGCTGTGTCAAGGTCTCTTCATGA GCTTGCAGTTAAGGTTGTTGCAGCCAACATGGTCCAGACAGACAGATCATTGTCTGGCACTCATCTTCTTTGTGCTGTTGGAAGGTATCAAGAGGCTTGT TCACAGTTGCAAGATGCAGGATGCTGGACGGATGCTGCAACTTTGGCGGCTACACATTTAAGTGGATCTGATTATGCTAGGGTGTTGTTAAGATGGGCCA ACCATGTCCTCCATGCCGAACACAACATCTGGAGGGCTCTTATTCTTTATGTTGCAGCTGGTGCATTGCAAGATGCCCTAGCAGCACTCCGGGAAACACA ACAACCTGATACAGCTGCCATGTTCATACTTGCTTGCCATGAAGGCCATGCACAATTTATATCAAATTTAGGAAATTCAGATGACGAATCAGGGTCTTCA ATCAAGGATACTCTCGTTGGCTTGCCAGGGTTGAATCCAGAGAATGAAGATGTCATTGCAGTAGGTGAATATTATGGACAATACCAAAGAAAGTTGGTGC ATCTGTGCATGGACTCCCAGCCATTTTCTGACTAA
AA sequence Show only first row Show all	>Potri.018G128400.1 pacid=42800907 polypeptide=Potri.018G128400.1.p locus=Potri.018G128400 ID=Potri.018G128400.1.v4.1 annot-version=v4.1 MSLSRSQPSTTTTDTILPGPPSRNNFSSLDLSSSNLLAFPSGSSISIVDALSLQLISTFPLPPPPSSTSSPSLSPFITSVRFTPSPLNRNLLSTEPSSSH LLLAAADRHGRIALLDFRLKSIVLWLEPDPNPKSGIQDLCWILSRSDSYALAAISGPSSLYLYTTTGAASTATASNCCFFKYDASPEFLSCIRRDPFDSR HFCVIGLKGFLLSVKVLAESENDVILKEFKIPTDYSDLLRLEKDVTPSSGGVGGSLAPASAVFPLYSVKMAFSPQWRNILFVTFPRELVVFDLKYETVLF SAALPRGCGKFLDVLPDPNNELLYCAHLDGKLSIWRRKEGEQVHVMCAMEELMPSIGTSVPSPSVLAVAICQSESTLQHVAKICSDAPDSPSAEVDFDNP FDFCDDTVVHSTTHMISISDDGKVWNWLLTAEGTGDNHKDTVADSREIPLIGDNANAVVVTDGLGKEAGKQQELGNGNKNRLSSTLSQDLSFKISLVGQL QLLSSTVTMLAVPSPSLIATLARGGNYPAVAVPLVALGTQSGTIDVVDVSANAVAASFSVHNSTVRGLRWLGNSRLVSFSYNQVNEKNGGYNNRLVVTCL RSGLNRPFRVLQKPERAPIRALRTSSSGRYLLILFRDAPVEVWAMTKTPIMLRSLALPFTVLEWTLPTVPRPVQNGPSKQVLWSSKDQTPVAQDGASTAK EPASESTAGSSDASQDDTAESFAFALVNGALGVFEVHGRRIRDFRPKWPSSSFVSSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSSFNTHREGIR RIKFSPVVPGDRSRGLIAVLFYDNTFSIFDLDLPDPLANSLLQPLFPGTLVLELDWLPLRTNRNDPLVLCIAGADSSFRLVEVNVNDKKLGLQPRAIKEK FQPMPICSPILLPTPHALALRMILQLGVKPSWFNTCSTTIDKRPHLIPGTASFKGDLRNYIIDLPPVGDSVVPEMLLKVLDPYRREGCILDDETARLYAI VVKKGCAARFAFAAAIFGETSEALFWLQLPRALKHLMDKLVTKSTQKAPVSASTPELDDVTMLNRISSKGRSVIGTEKKDPLSEGQLRSMAFQKEELWES ACERIPWHEKLEGEEAIQNRVHELVSIGNLEAAVSLLLSTSPESSYFYVNALRAVALSSAVSRSLHELAVKVVAANMVQTDRSLSGTHLLCAVGRYQEAC SQLQDAGCWTDAATLAATHLSGSDYARVLLRWANHVLHAEHNIWRALILYVAAGALQDALAALRETQQPDTAAMFILACHEGHAQFISNLGNSDDESGSS IKDTLVGLPGLNPENEDVIAVGEYYGQYQRKLVHLCMDSQPFSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G33530			Transducin family protein / WD...		Potri.018G128400 [exp]	0	1
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	3.74	0.7679
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	6.16	0.7580
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G197500 [exp]	6.70	0.7227
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	8.00	0.7297	NTN2.2
AT4G32640			Sec23/Sec24 protein transport ...		Potri.013G035800 [exp]	8.66	0.7415	CEF.2
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	8.66	0.7467
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.008G025900 [exp]	15.49	0.6960
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.008G012600 [exp]	16.15	0.6622	Pt-NTN2.3
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	16.79	0.7361
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Potri.005G099800 [exp]	17.88	0.7157

Compare expression of checked genes

Potri.018G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.