Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24150 247 / 1e-80 unknown protein AT4G32295 208 / 1e-66 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G067100 [exp] 476 / 1e-169 AT3G24150 259 / 2e-83 unknown protein Potri.006G254700 [exp] 234 / 1e-74 AT4G32295 243 / 8e-79 unknown protein Potri.018G027100 [exp] 232 / 5e-74 AT4G32295 238 / 6e-77 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019404 [exp] 276 / 1e-92 AT3G24150 251 / 6e-82 unknown protein Lus10043262 [exp] 276 / 1e-91 AT3G24150 258 / 7e-84 unknown protein Lus10001504 [exp] 190 / 7e-59 AT4G32295 208 / 9e-67 unknown protein Lus10002918 [exp] 91 / 4e-22 AT4G32295 98 / 1e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G128700.1 pacid=42800468 polypeptide=Potri.018G128700.1.p locus=Potri.018G128700 ID=Potri.018G128700.1.v4.1 annot-version=v4.1 ATGCCAAGGCCAGGGCCAAGGCCTTATGAGTGTGTGAGAAGAGCATGGCATAGTGATAGACACAAACCCATTAGAGGTTCCATGATTGGACAAATTTTAA GGATGGCCTATGACACTCACAGTGCTGCAACTAAAGGGAATAGGGAGTGGCAAGATAAGCTTCTTCTTGTGGTTTACAGGGCTGAGGAAATCATGTACTC CAAAGCCAACTCTGAGGCCGAGTATGTGAGCCAAGACACTTTATGGGACAGAGTAAACGATGCCGTTAATACCATTATAAGGAGAGATGAGAGCACTGAA ACTGGAGATCTTTTGCCTCCTTGTATTGAAGCTGCCCTTAATTTGGGATGCAAAGTGGAGAGAGCTTCGAGAAGCCAACGACACAACAATCCCAGGAGCT ACCTCAGCCCAAGAACGCAAGAACCGGCATCTGTAGCTCCTAGAGCTGTAGATAGAACTCATGATGAGCAAGGCCCTCGGCTAATGCCAATTCACTCGAT CAATCCATTGAACTTTGCTGCAAGAGCCACCACAATTGTGAATCCAAATCTTCCTGTTTCAGAGTCTAGTCATCGTCTGGCTGAGAGTAGTAATGCTGCT CCTCCTCACAGTTGCCCTATCTTGTATGAGAATATCCCTCCTGGCAGTGATCAGTTGACTACCAAGGAAGCCGACATGCATCAGAACTTTGGTTCAGTTT ATCCCTTGTTTTATGGAGATCAATATCAAATAGAAGCATCTGATATGGTCTCCGAAGTTTCGACAAGGATGAACTCCAACACTATACTTGTGGGTAAACC TATTGGTACATCAGTAGCTGCGCAAGGGATATCGGCGTCTTGCAGACAGTTTTCTCATGTTCCAGTGCTGAAGTTGGTTCCATGA
AA sequence Show only first row Show all	>Potri.018G128700.1 pacid=42800468 polypeptide=Potri.018G128700.1.p locus=Potri.018G128700 ID=Potri.018G128700.1.v4.1 annot-version=v4.1 MPRPGPRPYECVRRAWHSDRHKPIRGSMIGQILRMAYDTHSAATKGNREWQDKLLLVVYRAEEIMYSKANSEAEYVSQDTLWDRVNDAVNTIIRRDESTE TGDLLPPCIEAALNLGCKVERASRSQRHNNPRSYLSPRTQEPASVAPRAVDRTHDEQGPRLMPIHSINPLNFAARATTIVNPNLPVSESSHRLAESSNAA PPHSCPILYENIPPGSDQLTTKEADMHQNFGSVYPLFYGDQYQIEASDMVSEVSTRMNSNTILVGKPIGTSVAAQGISASCRQFSHVPVLKLVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24150			unknown protein		Potri.018G128700 [exp]	0	1
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	4.89	0.8276
AT5G10630			Translation elongation factor ...		Potri.018G006500 [exp]	6.70	0.7541
AT3G20480		AtLpxK	lipid X K, tetraacyldisacchari...		Potri.001G418800 [exp]	7.21	0.8031
AT2G41890			curculin-like (mannose-binding...		Potri.001G006100 [exp]	10.67	0.7584
AT4G04955		ATALN	allantoinase (.1)		Potri.004G041800 [exp]	13.74	0.7765
AT5G58575			unknown protein		Potri.009G074400 [exp]	15.29	0.7205
AT1G50840		PolIA, POLGAMMA...	polymerase I A, polymerase gam...		Potri.011G136900 [exp]	15.77	0.8249
AT2G41140		CRK1, ATCRK1, A...	CDPK-related kinase 1 (.1)		Potri.016G035500 [exp]	16.97	0.7822	CRK1.2
AT1G78910			Pseudouridine synthase family ...		Potri.004G228200 [exp]	18.54	0.7306
AT3G25060			Tetratricopeptide repeat (TPR)...		Potri.002G245200 [exp]	20.68	0.8259

Compare expression of checked genes

Potri.018G128700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.