Plant FIBer expression Database

Potri.018G129600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02530 166 / 2e-51 chloroplast thylakoid lumen protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G067600
[exp]
261 / 2e-88 AT4G02530 209 / 2e-68 chloroplast thylakoid lumen protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030109
[exp]
170 / 1e-52 AT4G02530 213 / 7e-70 chloroplast thylakoid lumen protein (.1)
PFAM info
Representative CDS sequence
>Potri.018G129600.1 pacid=42801418 polypeptide=Potri.018G129600.1.p locus=Potri.018G129600 ID=Potri.018G129600.1.v4.1 annot-version=v4.1
ATGGCGACAACATTTCTCTCGACTGCAAAACCCTTCCTCTCCTCTTCAACACCATCTTCTTTATCATCCCTAACAAATAGACCTCTCCTGTTTTCTTGTC
CACAACAAAAATGTAATCCCAGGAGACCATTGCCTTCATGCAAAGCTCTCAGTGATGAGTCACTTCCTGTACCAGCTGCCTCTCCAATTATTATAACAAA
AAGAAGCCTGTCCATTTGCTTCTTAACCAGCTTTGTATTCTCATTGGCAAGTAGAGGTAGTTCTAGTTCCAATGCAGCTATACTAGAAGCTGATGATGAC
GAAGAATTATTGGAGAAAGTTAAGAGGGACAGAAAGAAAAGGTTAGAAAGACAAGGAGTTATTAGCTCAGCTAACAAGGAAAAAGGATATTTGCAAGATC
TTGTGTACAAGCTAAGTAAAGTAGGGCAAGCCATAGACAACAATGATCTATCTACTGCTAGTTCGGTTCTTGGGGGTAGCACTGATACTGATTGGGTTAA
GAAGGCTAACATTGCCTTCACCAAGCTGAGCTCTAGCCCTGAAGAAAAGATAGAGGTGGACACCTTTAATTCCTCTCTATCTTCTTTAATTTCATCAGTT
ACTAGCAATGACATTGAATCCTCCAAAACTGCTTTTGTATCATCAGCCACTGCTTTTGAGAAATGGACAACCTTGACAGGGCTGTTTGGACAGCTCAAAG
GGCTTTGA
AA sequence
>Potri.018G129600.1 pacid=42801418 polypeptide=Potri.018G129600.1.p locus=Potri.018G129600 ID=Potri.018G129600.1.v4.1 annot-version=v4.1
MATTFLSTAKPFLSSSTPSSLSSLTNRPLLFSCPQQKCNPRRPLPSCKALSDESLPVPAASPIIITKRSLSICFLTSFVFSLASRGSSSSNAAILEADDD
EELLEKVKRDRKKRLERQGVISSANKEKGYLQDLVYKLSKVGQAIDNNDLSTASSVLGGSTDTDWVKKANIAFTKLSSSPEEKIEVDTFNSSLSSLISSV
TSNDIESSKTAFVSSATAFEKWTTLTGLFGQLKGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02530 chloroplast thylakoid lumen pr... Potri.018G129600
[exp]
0 1
AT1G08380 PSAO photosystem I subunit O (.1) Potri.004G199400
[exp]
1.73 0.9859
AT3G50820 OEC33, PSBO2, P... OXYGEN EVOLVING COMPLEX SUBUNI... Potri.007G033700
[exp]
2.44 0.9836 PSBO.2
AT1G55670 PSAG photosystem I subunit G (.1) Potri.011G168700
[exp]
4.58 0.9806 Pt-PSAG.2
AT5G64040 PSAN, PSI-N photosystem I reaction center ... Potri.007G105900
[exp]
5.29 0.9804
AT1G55670 PSAG photosystem I subunit G (.1) Potri.001G471900
[exp]
6.00 0.9800 Pt-PSAG.1
AT1G20340 PETE2, DRT112 PLASTOCYANIN 2, DNA-DAMAGE-REP... Potri.002G016000
[exp]
6.32 0.9804 PETE.2
AT4G23890 NdhS, CRR31 NADH dehydrogenase-like comple... Potri.003G140400
[exp]
8.12 0.9725
AT1G52230 PSAH2, PSAH-2, ... PHOTOSYSTEM I SUBUNIT H-2, pho... Potri.003G052500
[exp]
8.48 0.9766 Pt-PSAH.1
AT3G54890 LHCA1 photosystem I light harvesting... Potri.008G041000
[exp]
9.21 0.9648 2
AT2G30570 PSBW photosystem II reaction center... Potri.005G218800
[exp]
9.53 0.9789

Potri.018G129600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.