Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20200 317 / 6e-97 nucleoporin-related (.1) AT3G10650 69 / 8e-12 AtNUP1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014800 [exp] 102 / 3e-22 AT3G10650 379 / 1e-110 unknown protein Potri.010G244700 [exp] 97 / 3e-20 AT3G10650 353 / 8e-102 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019408 [exp] 469 / 5e-155 AT5G20200 273 / 2e-80 nucleoporin-related (.1) Lus10043265 [exp] 454 / 5e-149 AT5G20200 290 / 8e-87 nucleoporin-related (.1) Lus10043447 [exp] 72 / 1e-12 AT3G10650 320 / 4e-90 unknown protein Lus10034137 [exp] 71 / 3e-12 AT3G10650 323 / 2e-92 unknown protein Lus10028861 [exp] 65 / 2e-10 AT3G10650 436 / 2e-131 unknown protein Lus10008959 [exp] 59 / 1e-08 AT3G10650 405 / 4e-120 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G129900.2 pacid=42800793 polypeptide=Potri.018G129900.2.p locus=Potri.018G129900 ID=Potri.018G129900.2.v4.1 annot-version=v4.1 ATGGGAAGCACAAACGACGGCGAAGCGATGTCGTTGGGACGAAAATCGATAGTGGAAGTTCGAGGAGCCGGGGGTAAATTGAGGAAACCGCCGTCGCGGA GGCCACTGGCAACACCGTATGCTCGGCCGCAGGATAACCAAGCGCAACGGCGTCGGTGGTTGTCGAAGCTGGTGGATCCGGCTTACAAGTTGATTTCTGG CGGTGCGAACTTGATTTTCCCCTCTTTCTTCTCCAAATCGGAGTCTGTGGATGACGATGCTAATCGGGAAGAAGATGACGTGAAATCACATGAGGAGGTG GAGGAGCAGAATGCTAGTGGTGATGATGCCAATCTCACTGTTAATCAAGCAGCACCCAGATCAACTGATGTAGCTGGTACTAGCAGAGCTGCAGAAATAT CCAAGAGTGGTTCTGACTTTGAGGGCCATGAACATAAAAAACTTGGCATTTCTGGTCATAATGGGCTTTCTGAAATTGAACAAGTAGTGAAGGACCAAAA GTTTTCTAGGGATGAAATTAATCGTTTGATGGAGATACTTCATTCAAGAGCTATTAATCTTCCAAATGTTGAGCAAGAAAAGGAACACTCAAGCATGACT GCTAGAGATGTTGGAAGGCCTGCTGCTGCCATTGAATGTTCAAGAAAGTCAACTGAAGAAAAGCGAGAGGATATTAACACAGCTATTTGGGGAACTTCAA AAATTCAAGAAAAGAGATATTCAAGCGTGATTCCTGGAGTTGTTGGAGGCCTTGCAATCCCCTTTGAAAGTTCAACAAAGTCAACCGAAGAAAAGCATGA AGATTTGAATACAGCTATTTGGGGAAACTCAACCCCTCTTGTCAAGTCAACTCTGCCAGATGATGTTGGAGCCTCACCAATTGATATTGCAAGGGCTTAT ATGGAAAACCGAGCATCAGAAGTAGGCTTTGGCTCTAAGAGTTTAATTTCAAAAGATCGAGGGGCATTAGTGATTGGCAACCTGCTTGGATCAAAGCCAT TTTTGCCATCTCCTTCACCTAAGCCCTCCACATGCTGGCCAGGTGCCATGGTACAGGATCAGCGTGGGTTTGTGACTCCACAAAGTCAAAGAGGGAGATT CGGGCTTCACAATTTTCCCCGAACTCCTTATTCTAGAACTTTTTATTCAAAGTCTAAGTCCCAGTTACAAGGTGATCATGATAGGCCCTTGAATATGACG TCATCTCCCTTTCAGCAGCCTCAAACTCCTGTATATGGACAGGTGAATTCAAGGTTCAATTCAGTGGATGATGTACATGGTTCTGTTGGACCCATTCGTA GGACTAGGATACGGCATAAAGCTGTCGCAGAAACTCCTTCTAGAGGGTCTGCTAGTTATCATTCAACTTTAAACAGTCCTCAGGTGGAAAACTTCAATGC CTTTGAAGGATTATTTTCAGGTGTAAAGAAGAGTACAGAAAAAGGAGGAACAAGTAGCCCCTCAAAATTTTTGGTAGCAGATAGTGAGCCACAAAGCTCC AAAGTCAGTGTTCCATCCGTTCCTCCACATTCCAGGCAGATGGCTCAGAAAATATTAGAACACTTGGAGAGAAATTTGCCAACTCCTAAAGAGAAATCTG CTGAGTTGAGGCTAGCCACCTCCTGGAAGAAATCCCTCTCCTCAAACAACAATAATAGCTTGGCCAATGGCCCCGACTCTTTGAGAAAACCAGATCAAGC TGACAAAACAAATTCAGCTCAGGCGACTGAAGATAGAGGGAATCTTCTTTTTAAGTTTGCTCCTCGGGAAGTTACTGTCCAAGCTGACTCTGCTGCAAAA GATAATACTTCAGCTTCAGACATGAAGGCTGTGCCAAATGCCGCTTCCTCGGAGTTTCCGAGTTTTCAGAAGAAGCCTCCCACTCACTCTTCAGGGAATA AACCAGTTTTGTCTTCTATTACCGTTGGCAAGCCTGATCAAAGATGGGCATTATCTTCTGATAAGACAACTTCCGGATTTACTTTCCCTGTCTCTGCAAC TTCGGGTGTAAACTCTGAGCCTCCAACACCAACCATCATGCCATCAACCTCAGCCACCGTTCCGTCTCCACCTAAAGACGCATCCTCAATTCCTTCATAT AGTTTTGGCTCTAAGAAGTCTGATCCTGCCCTTGTTTTTTCTTTCCCTTCAACAAGCAACGCCTCAATACCAGACAATGCATCTTCCGATCTGAAGTTCA AGTTTGGATCAGAGAAGACAACTAGGTTATCTTTCAGTTCTATAGGCAAAGATGCCATCTGCTATTAA
AA sequence Show only first row Show all	>Potri.018G129900.2 pacid=42800793 polypeptide=Potri.018G129900.2.p locus=Potri.018G129900 ID=Potri.018G129900.2.v4.1 annot-version=v4.1 MGSTNDGEAMSLGRKSIVEVRGAGGKLRKPPSRRPLATPYARPQDNQAQRRRWLSKLVDPAYKLISGGANLIFPSFFSKSESVDDDANREEDDVKSHEEV EEQNASGDDANLTVNQAAPRSTDVAGTSRAAEISKSGSDFEGHEHKKLGISGHNGLSEIEQVVKDQKFSRDEINRLMEILHSRAINLPNVEQEKEHSSMT ARDVGRPAAAIECSRKSTEEKREDINTAIWGTSKIQEKRYSSVIPGVVGGLAIPFESSTKSTEEKHEDLNTAIWGNSTPLVKSTLPDDVGASPIDIARAY MENRASEVGFGSKSLISKDRGALVIGNLLGSKPFLPSPSPKPSTCWPGAMVQDQRGFVTPQSQRGRFGLHNFPRTPYSRTFYSKSKSQLQGDHDRPLNMT SSPFQQPQTPVYGQVNSRFNSVDDVHGSVGPIRRTRIRHKAVAETPSRGSASYHSTLNSPQVENFNAFEGLFSGVKKSTEKGGTSSPSKFLVADSEPQSS KVSVPSVPPHSRQMAQKILEHLERNLPTPKEKSAELRLATSWKKSLSSNNNNSLANGPDSLRKPDQADKTNSAQATEDRGNLLFKFAPREVTVQADSAAK DNTSASDMKAVPNAASSEFPSFQKKPPTHSSGNKPVLSSITVGKPDQRWALSSDKTTSGFTFPVSATSGVNSEPPTPTIMPSTSATVPSPPKDASSIPSY SFGSKKSDPALVFSFPSTSNASIPDNASSDLKFKFGSEKTTRLSFSSIGKDAICY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20200			nucleoporin-related (.1)		Potri.018G129900 [exp]	0	1
					Potri.013G048150 [exp]	1.41	0.8870
AT4G17900			PLATZ transcription factor fam...		Potri.019G051200 [exp]	2.82	0.8470
AT4G02715			unknown protein		Potri.005G211400 [exp]	3.46	0.8664
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Potri.009G105600 [exp]	6.92	0.8642
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Potri.005G177400 [exp]	12.00	0.8205
AT5G22040			unknown protein		Potri.008G001700 [exp]	12.48	0.8236
AT2G32600			hydroxyproline-rich glycoprote...		Potri.016G097600 [exp]	13.22	0.8523
AT2G14910			unknown protein		Potri.001G298200 [exp]	15.65	0.8491
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	20.39	0.8616
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	21.63	0.8520

Compare expression of checked genes

Potri.018G129900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.