Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CIPK24.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35410 711 / 0 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 624 / 0 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT1G30270 543 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 543 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT2G26980 531 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT1G01140 510 / 3e-180 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G45820 426 / 6e-147 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT1G48260 407 / 7e-140 CIPK17, SnRK3.21 SNF1-RELATED PROTEIN KINASE 3.21, CBL-interacting protein kinase 17 (.1) AT4G30960 403 / 5e-138 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G10930 403 / 5e-138 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G068400 [exp] 830 / 0 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.001G222600 [exp] 561 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.002G109000 [exp] 561 / 0 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Potri.009G021000 [exp] 550 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 548 / 0 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 537 / 0 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.014G104200 [exp] 520 / 0 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 516 / 0 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.010G002500 [exp] 432 / 2e-149 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019411 [exp] 773 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10043264 [exp] 666 / 0 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 625 / 0 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10042816 [exp] 542 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 541 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10002692 [exp] 515 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 514 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10022590 [exp] 493 / 6e-174 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10021488 [exp] 419 / 2e-145 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10021852 [exp] 414 / 3e-142 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.018G130500.8 pacid=42801103 polypeptide=Potri.018G130500.8.p locus=Potri.018G130500 ID=Potri.018G130500.8.v4.1 annot-version=v4.1 ATGATGAAGAAAGTAACGAGAAAGGTAGGAAAATATGAAGTTGGCCGTACAATTGGTGAAGGAACCTTCGCCAAGGTCAAATTTGCTCAAAATAGAGAAA CAGGAGAGAGTGTCGCCATGAAGATTCTTTCTAAATCCGCCATTCTTAAGCACAGAATGGTTGATCAGATAAAAAGAGAGATATCGATCATGAAGCTTGT CAGACATCCTTACATAGTTATGCTGCATGAGGTTTTGGCGAGCCGGACGAAGATATATATAATTCTAGAGTTTGTTACTGGAGGAGAATTATTTGATAAA ATTGTTCATCAAAGAAGACTTGAGGAGAACGAGTCGAGACGGTATTTTCAGCAGCTTATTGATGCAGTTGCTCATTGTCATTGCAAGGGGGTGTACCACA GAGACCTGAAGCCTGAAAATCTTCTTCTTGATGCATTTGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCGTTGCCGCAGAAAGGGGTTGGACTTCT TCATACGACATGTGGAACCCCGAATTATGTTGCACCTGAGGTGCTTGGTCACCAAGGTTATGATGGGGCTGCTGCTGATGTGTGGTCATGTGGAGTCATC CTCTTTGTTCTAATGGCTGGATATCTTCCATTTGAGGAGACAGACCTTCCAACCTTGTACCGAAAGATAAATGCTGCGGAATATTCGTGTCCATTTTGGT TTTCCCCTGGGGCGAAAGCATTGATAGATAAGATACTCAATCCCAATCCTAAAACTCGTATAGGGATTGAGGGAATTAAAAAACATCCATGGTTTCAGAA AAACTATGAGCCTGTTGGACATAGGGAAGATGAGGAAGTGAATTTGGATGATGTTCATGCTGTTTTTGATGACATTGAGGATCAATATGTAGCAGAGCAA TTGGAGAACAGTGAAGATGGTCCTCTGGTAATGAATGCATTTGAGATGATTACCCTGTCTCAAGGGTTGAATCTATCAGCGTTGTTCGACAGACGTCAGG ATTATATAAAACGACAAACTCGTTTTGTATCACGCAAACCTGCAAAAGATATAATTTCAGCAATTGAAGCAGTTGCAGAATCAATGAATCTCAAGGTCCA TACACGAAATTACAAGACAAGACTTGAAGGAGTATCTGAAAACAAGGCTGGACAATTTGCAGTTGTTCTGGAGGTTTATGAAGTTGCTCCATCACTTTTC ATGGTAGATGCTCGGAAGGCTTCTGGGGAAACTCTTGAATATCACAAGTTCTACAAGAATTTCTGCACTAAGCTAGAAAATATCATCTGGAAACCACCAG AGGGTGCAAAACTTCCTGCCTGCTTCGAACAATGA
AA sequence Show only first row Show all	>Potri.018G130500.8 pacid=42801103 polypeptide=Potri.018G130500.8.p locus=Potri.018G130500 ID=Potri.018G130500.8.v4.1 annot-version=v4.1 MMKKVTRKVGKYEVGRTIGEGTFAKVKFAQNRETGESVAMKILSKSAILKHRMVDQIKREISIMKLVRHPYIVMLHEVLASRTKIYIILEFVTGGELFDK IVHQRRLEENESRRYFQQLIDAVAHCHCKGVYHRDLKPENLLLDAFGNLKVSDFGLSALPQKGVGLLHTTCGTPNYVAPEVLGHQGYDGAAADVWSCGVI LFVLMAGYLPFEETDLPTLYRKINAAEYSCPFWFSPGAKALIDKILNPNPKTRIGIEGIKKHPWFQKNYEPVGHREDEEVNLDDVHAVFDDIEDQYVAEQ LENSEDGPLVMNAFEMITLSQGLNLSALFDRRQDYIKRQTRFVSRKPAKDIISAIEAVAESMNLKVHTRNYKTRLEGVSENKAGQFAVVLEVYEVAPSLF MVDARKASGETLEYHKFYKNFCTKLENIIWKPPEGAKLPACFEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G130500 [exp]	0	1	Pt-CIPK24.2
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030400 [exp]	11.26	0.6097
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	23.15	0.5489	Pt-CUL1.3
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141600 [exp]	27.38	0.5526
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.009G086300 [exp]	32.86	0.4715
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.005G217500 [exp]	36.37	0.5396
AT3G19553			Amino acid permease family pro...		Potri.009G090300 [exp]	46.98	0.5137	PtrLAT7
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.001G356900 [exp]	66.52	0.4828	SOYAP4.1
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.007G010800 [exp]	67.26	0.4366	SVP.1
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.006G198800 [exp]	68.00	0.4976
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.009G079500 [exp]	76.30	0.4475

Compare expression of checked genes

Potri.018G130500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.