Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52570 1204 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT3G15730 1196 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT5G25370 1027 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT2G42010 714 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 697 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11840 688 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11830 681 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G35790 674 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT4G11850 672 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT1G55180 583 / 0 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032800 [exp] 1264 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1) Potri.001G193000 [exp] 1253 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.006G253900 [exp] 1085 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.001G112100 [exp] 720 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.003G015000 [exp] 711 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.014G074700 [exp] 700 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.007G060300 [exp] 700 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 700 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 697 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039806 [exp] 1242 / 0 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10018575 [exp] 1241 / 0 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1) Lus10031634 [exp] 1231 / 0 AT3G15730 1380 / 0.0 phospholipase D alpha 1 (.1) Lus10033706 [exp] 1230 / 0 AT3G15730 1382 / 0.0 phospholipase D alpha 1 (.1) Lus10041787 [exp] 1066 / 0 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10006819 [exp] 706 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 705 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10041855 [exp] 701 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 699 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 699 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal CL0479 [poplar] [flax] PLD PF13091 [poplar] [flax] PLDc_2 PLD-like domain
Representative CDS sequence Show only first row Show all	>Potri.018G131200.1 pacid=42802049 polypeptide=Potri.018G131200.1.p locus=Potri.018G131200 ID=Potri.018G131200.1.v4.1 annot-version=v4.1 ATGGAGCCTGTTCTGCTACATGGAACCCTTCACGTGACTATCTACGAGGCTTGTAGGGTTTTTGGTTCAGGGTGCAGCAAGTTTTGTTGCAAGATATTGG AAAACATTGATAAGACTGTTGGATTTGGAAAAGGCTTCTGTAAACTATATGCTGGAATTTATTTAGAAGAGACTAGAGTTGGCAGAACTAGATTGTTAGA ACACCCTCACTCCGATCCGCAATGGTTTGAGTCTTTCCACATTTACTGTGCTCATATAGCATCTAATGTTATATTCTCCGTCAAAGAAGATAATCCTATT GAGGCAGTTGTGATAGGGAAAGCTTATTTGCCTGTCGCTGAACTCCTAGATGGAAAAGAAGTAGAGAAATGGCTTAACATTCTGCATAAAAACCATAGAC CCCTGCATAAAGGTTCAAAGATTCATGTAAAAGTGCAGTTCTTTGATGCCACTAAACGGCATTATTGGTCTAGAGGGATTGGAAGTCCTAAATTTCCAGG TGTCCCATACACATTCTTTAGTCAAAGAAGTGGTTGCAGAGTCACTCTTTACCAAGATGCTCATGTTCCTGATAAATTTGTTCCGAAAATCCCTCTAGCT GGGGGCAAGCGTCATGAACAACACCGTTGCTGGGAAGACATCTTCGATGCCATTTTCAATGCAAAGCATCTTATTTACATCACAGGGTGGTCTGTATTTA CTAAAATCACTTTGGTAAGGGACCCAACGAGGCAAAAACCAGGAGGAGACATGATCCTAGGTGAGCTACTGAAGAAAAAGGCCAACGAAGGTGTTAGGGT CTTGATGCTCGTTTGGGATGACAGAACTTCAGTGAAGTTGCTTAAGAAGGATGGATTGATGGCTACACATGATGAGGATACAGGGAGTTATTTCCATAAC ACAAAAGTCCATTGTGTTTTGTGCCCTCGTAACCCTGATAATGGACAGAGCATTATACAAGGCATAGAGATTTCTACAATGTTCACTCATCACCAGAAGA CTCTGGTGGTGGATAGTGAATTGCCTGGTGGAGAACTACCAAAGAGGAGGATCGTGAGTTTCATTGGTGGTATTGACCTTTGTGACGGGAGATATGACAC TCCATCTCATCCGATTTTCAGGACTTTGGATACAGTACACCACAACGATTTTCGCCAGCCTAATTTCACAGGTGCCTCAATTCATAAAGGAGGACCAAGG GAGCCTTGGCATGACGTTCATTGTCGGTTAGAAGGATCCATTGCTTGGGATGTCTTGGTCAATTTTGAACAGAGATGGAGAAAGCAAGGTAAGGAGGACT TGCTTCTTCAACCAAGAGAACTTGACTGCATTCTTACACCTCCATCTCCTGTTATGCTCCCCGAAGACCATGAAACATGGAATGTTCAACTGTTTCGGTC TATCGATGGTGGAGCTGCTTTTGGCTTCCCTGAAGCTCCTGAAGATGCAGCCAGAGTCGGACTCGTCTGTGGGAAGGATAATGTCATTGATAGAAGCATT CAGGATGCTTATATCAATGCCATTCGGCGGGCAAAAAATTTCATTTACATTGAAAACCAGTACTTCCTTGGAAGCTCATTTTCCTGGAAATCAAATGACG TAAAGGTTGAGGAGGTTGGTGCTTTGCATCTTATCCCGAAAGAACTTTCATTAAAGATTGTTAGCAAAATTAAAGCTGGAGAGAGATTTTCTGTCTACGT TGTCATTCCAATGTGGCCAGAGGGCATTCCAGAAAGTGGTTCCGTTCAAGCAATATTGAACTGGCAAAAGAGGACGATGGAGATGATGTATAGCGATATA GCTGAAGCTCTCCAGGACAAGGGGGTTGAGGCAAATCCAAAGGACTACTTAACATTCTTTTGCCTTGGCAAACACGAGAGAGAGATGCCCGGAGAATATG TTCCTTCAGAGAGACCTGAACACAATTCAGATTACAGCAGAGCTCAGAAAGCTAGGCGGTTCATGATCTATATTCATGCCAAGATGATGATCGTTGATGA TGAATACATAATCACTGGATCTGCCAACATTAATCAACGATCAATGGATGGAGGGAGAGATACAGAGATAGCAATGGGAGCCTACCAACCATATCACTTA GCCACCAACCAGCCTGCCAGGGGCCAGATTCATGGCTTCAGGATGTCATTATGGTATGAACACCTAGGCCAGCTTGATGACACTTTTTGCCATCCTGAGA GCCTGGAATGTGTCCGAAAGGTGAATCACATTGCTGAAAAGAATTGGCACCTCTATTCATCCGAGGTATTGGACGACGATTTACCAGGCCATTTGCTTGC TTATCCCATTGGAGTCACCAGTAATGGAGAGCTCACAGAGCTTCAAGGGACAGAATTTTTCCCTGGCACCAAGGCTCGTGTTTTCGGGTCAAAATCTGAG CTGCTCCCTTCAATCCTCACAACTTAG
AA sequence Show only first row Show all	>Potri.018G131200.1 pacid=42802049 polypeptide=Potri.018G131200.1.p locus=Potri.018G131200 ID=Potri.018G131200.1.v4.1 annot-version=v4.1 MEPVLLHGTLHVTIYEACRVFGSGCSKFCCKILENIDKTVGFGKGFCKLYAGIYLEETRVGRTRLLEHPHSDPQWFESFHIYCAHIASNVIFSVKEDNPI EAVVIGKAYLPVAELLDGKEVEKWLNILHKNHRPLHKGSKIHVKVQFFDATKRHYWSRGIGSPKFPGVPYTFFSQRSGCRVTLYQDAHVPDKFVPKIPLA GGKRHEQHRCWEDIFDAIFNAKHLIYITGWSVFTKITLVRDPTRQKPGGDMILGELLKKKANEGVRVLMLVWDDRTSVKLLKKDGLMATHDEDTGSYFHN TKVHCVLCPRNPDNGQSIIQGIEISTMFTHHQKTLVVDSELPGGELPKRRIVSFIGGIDLCDGRYDTPSHPIFRTLDTVHHNDFRQPNFTGASIHKGGPR EPWHDVHCRLEGSIAWDVLVNFEQRWRKQGKEDLLLQPRELDCILTPPSPVMLPEDHETWNVQLFRSIDGGAAFGFPEAPEDAARVGLVCGKDNVIDRSI QDAYINAIRRAKNFIYIENQYFLGSSFSWKSNDVKVEEVGALHLIPKELSLKIVSKIKAGERFSVYVVIPMWPEGIPESGSVQAILNWQKRTMEMMYSDI AEALQDKGVEANPKDYLTFFCLGKHEREMPGEYVPSERPEHNSDYSRAQKARRFMIYIHAKMMIVDDEYIITGSANINQRSMDGGRDTEIAMGAYQPYHL ATNQPARGQIHGFRMSLWYEHLGQLDDTFCHPESLECVRKVNHIAEKNWHLYSSEVLDDDLPGHLLAYPIGVTSNGELTELQGTEFFPGTKARVFGSKSE LLPSILTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Potri.018G131200 [exp]	0	1
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.019G023600 [exp]	3.00	0.9831
AT5G14650			Pectin lyase-like superfamily ...		Potri.001G346800 [exp]	3.74	0.9831
AT1G16670			Protein kinase superfamily pro...		Potri.008G040800 [exp]	5.29	0.9620
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Potri.010G003000 [exp]	6.32	0.9794
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039600 [exp]	6.48	0.9822
AT4G26010			Peroxidase superfamily protein...		Potri.013G066800 [exp]	6.92	0.9785
AT2G01900			DNAse I-like superfamily prote...		Potri.010G101700 [exp]	8.00	0.9812
AT1G12100			Bifunctional inhibitor/lipid-t...		Potri.001G121800 [exp]	11.22	0.9786
AT5G15180			Peroxidase superfamily protein...		Potri.007G122250 [exp]	11.48	0.9793
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Potri.009G005600 [exp]	13.49	0.9724

Compare expression of checked genes

Potri.018G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.